Strain Fitness in Pseudomonas simiae WCS417 around PS417_21630

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_21620 and PS417_21625 are separated by 386 nucleotidesPS417_21625 and PS417_21630 are separated by 102 nucleotidesPS417_21630 and PS417_21635 are separated by 340 nucleotidesPS417_21635 and PS417_21640 are separated by 72 nucleotidesPS417_21640 and PS417_21645 are separated by 108 nucleotidesPS417_21645 and PS417_21650 are separated by 62 nucleotides PS417_21620: PS417_21620 - hypothetical protein, at 4,691,423 to 4,691,602 _21620 PS417_21625: PS417_21625 - DNA-binding protein, at 4,691,989 to 4,692,315 _21625 PS417_21630: PS417_21630 - magnesium transporter, at 4,692,418 to 4,693,860 _21630 PS417_21635: PS417_21635 - tRNA-Arg, at 4,694,201 to 4,694,277 _21635 PS417_21640: PS417_21640 - tRNA-Arg, at 4,694,350 to 4,694,426 _21640 PS417_21645: PS417_21645 - tRNA-Ser, at 4,694,535 to 4,694,625 _21645 PS417_21650: PS417_21650 - carbon storage regulator, at 4,694,688 to 4,694,876 _21650 Position (kb) 4692 4693 4694Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4691.625 kb on + strandat 4691.625 kb on + strandat 4691.625 kb on + strandat 4691.625 kb on + strandat 4691.626 kb on - strandat 4691.626 kb on - strandat 4691.626 kb on - strandat 4691.626 kb on - strandat 4691.626 kb on - strandat 4691.696 kb on + strandat 4691.699 kb on - strandat 4691.699 kb on - strandat 4691.813 kb on + strandat 4691.834 kb on + strandat 4691.835 kb on - strandat 4691.930 kb on + strandat 4691.930 kb on + strandat 4691.931 kb on - strandat 4691.986 kb on + strandat 4691.986 kb on + strandat 4691.989 kb on - strandat 4692.045 kb on - strand, within PS417_21625at 4692.623 kb on + strand, within PS417_21630at 4692.632 kb on + strand, within PS417_21630at 4692.948 kb on + strand, within PS417_21630at 4693.236 kb on - strand, within PS417_21630at 4693.293 kb on - strand, within PS417_21630at 4693.561 kb on + strand, within PS417_21630at 4693.761 kb on + strandat 4693.843 kb on + strandat 4693.844 kb on - strandat 4693.849 kb on + strandat 4693.849 kb on + strandat 4693.849 kb on + strandat 4693.849 kb on + strandat 4693.849 kb on + strandat 4693.860 kb on + strandat 4693.966 kb on + strandat 4693.966 kb on + strandat 4694.004 kb on + strandat 4694.004 kb on + strandat 4694.005 kb on - strandat 4694.084 kb on + strandat 4694.084 kb on + strandat 4694.084 kb on + strandat 4694.200 kb on - strandat 4694.200 kb on - strandat 4694.200 kb on - strandat 4694.252 kb on - strand, within PS417_21635

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
remove
4,691,625 + +0.4
4,691,625 + +0.8
4,691,625 + +0.5
4,691,625 + +0.8
4,691,626 - -0.0
4,691,626 - -0.8
4,691,626 - +1.0
4,691,626 - +0.6
4,691,626 - +0.5
4,691,696 + +0.7
4,691,699 - +0.1
4,691,699 - +0.5
4,691,813 + +0.0
4,691,834 + +0.4
4,691,835 - -0.2
4,691,930 + -0.3
4,691,930 + -0.2
4,691,931 - +1.1
4,691,986 + +1.0
4,691,986 + -1.0
4,691,989 - +2.4
4,692,045 - PS417_21625 0.17 +0.5
4,692,623 + PS417_21630 0.14 -2.8
4,692,632 + PS417_21630 0.15 -0.5
4,692,948 + PS417_21630 0.37 -0.8
4,693,236 - PS417_21630 0.57 -0.3
4,693,293 - PS417_21630 0.61 -1.3
4,693,561 + PS417_21630 0.79 -1.8
4,693,761 + -1.4
4,693,843 + -1.3
4,693,844 - -0.0
4,693,849 + -1.1
4,693,849 + -3.3
4,693,849 + -1.0
4,693,849 + -1.2
4,693,849 + -1.2
4,693,860 + -1.2
4,693,966 + -0.2
4,693,966 + -1.4
4,694,004 + -0.5
4,694,004 + -2.1
4,694,005 - -0.5
4,694,084 + -0.3
4,694,084 + +0.2
4,694,084 + -0.6
4,694,200 - -1.9
4,694,200 - -1.0
4,694,200 - -0.9
4,694,252 - PS417_21635 0.66 -2.0

Or see this region's nucleotide sequence