Strain Fitness in Pseudomonas simiae WCS417 around PS417_18300

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18295 and PS417_18300 are separated by 3 nucleotidesPS417_18300 and PS417_18305 are separated by 244 nucleotidesPS417_18305 and PS417_18310 are separated by 90 nucleotidesPS417_18310 and PS417_18315 overlap by 20 nucleotides PS417_18295: PS417_18295 - histidine kinase, at 3,988,500 to 3,989,885 _18295 PS417_18300: PS417_18300 - transcriptional regulator, at 3,989,889 to 3,990,572 _18300 PS417_18305: PS417_18305 - tRNA-Pro, at 3,990,817 to 3,990,893 _18305 PS417_18310: PS417_18310 - hypothetical protein, at 3,990,984 to 3,991,340 _18310 PS417_18315: PS417_18315 - integration host factor subunit alpha, at 3,991,321 to 3,991,623 _18315 Position (kb) 3989 3990 3991Strain fitness (log2 ratio) -2 -1 0 1 2at 3988.981 kb on - strand, within PS417_18295at 3989.306 kb on - strand, within PS417_18295at 3989.382 kb on + strand, within PS417_18295at 3989.382 kb on + strand, within PS417_18295at 3989.383 kb on - strand, within PS417_18295at 3989.383 kb on - strand, within PS417_18295at 3989.602 kb on - strand, within PS417_18295at 3989.620 kb on + strand, within PS417_18295at 3989.621 kb on - strand, within PS417_18295at 3989.623 kb on + strandat 3989.623 kb on + strand, within PS417_18295at 3989.623 kb on + strand, within PS417_18295at 3989.623 kb on + strand, within PS417_18295at 3989.623 kb on + strand, within PS417_18295at 3989.623 kb on + strand, within PS417_18295at 3989.623 kb on + strand, within PS417_18295at 3989.623 kb on + strand, within PS417_18295at 3989.624 kb on - strand, within PS417_18295at 3989.624 kb on - strand, within PS417_18295at 3989.624 kb on - strand, within PS417_18295at 3989.627 kb on + strand, within PS417_18295at 3989.628 kb on - strand, within PS417_18295at 3989.656 kb on + strand, within PS417_18295at 3989.656 kb on + strand, within PS417_18295at 3989.656 kb on + strand, within PS417_18295at 3989.657 kb on - strand, within PS417_18295at 3989.657 kb on - strand, within PS417_18295at 3989.657 kb on - strand, within PS417_18295at 3989.657 kb on - strand, within PS417_18295at 3989.727 kb on + strand, within PS417_18295at 3989.879 kb on + strandat 3989.955 kb on + strandat 3990.189 kb on + strand, within PS417_18300at 3990.189 kb on + strand, within PS417_18300at 3990.190 kb on - strand, within PS417_18300at 3990.221 kb on - strand, within PS417_18300at 3990.426 kb on + strand, within PS417_18300at 3990.460 kb on + strand, within PS417_18300at 3990.534 kb on + strandat 3991.123 kb on + strand, within PS417_18310at 3991.172 kb on - strand, within PS417_18310at 3991.240 kb on - strand, within PS417_18310

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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3,988,981 - PS417_18295 0.35 +0.1
3,989,306 - PS417_18295 0.58 -1.5
3,989,382 + PS417_18295 0.64 +0.5
3,989,382 + PS417_18295 0.64 +0.9
3,989,383 - PS417_18295 0.64 +0.2
3,989,383 - PS417_18295 0.64 -0.1
3,989,602 - PS417_18295 0.80 +0.0
3,989,620 + PS417_18295 0.81 +0.1
3,989,621 - PS417_18295 0.81 +0.0
3,989,623 + -0.1
3,989,623 + PS417_18295 0.81 -1.1
3,989,623 + PS417_18295 0.81 -0.0
3,989,623 + PS417_18295 0.81 +0.4
3,989,623 + PS417_18295 0.81 +1.2
3,989,623 + PS417_18295 0.81 -0.3
3,989,623 + PS417_18295 0.81 -0.3
3,989,623 + PS417_18295 0.81 -0.2
3,989,624 - PS417_18295 0.81 +1.9
3,989,624 - PS417_18295 0.81 -0.3
3,989,624 - PS417_18295 0.81 -0.1
3,989,627 + PS417_18295 0.81 +0.4
3,989,628 - PS417_18295 0.81 -0.0
3,989,656 + PS417_18295 0.83 +0.7
3,989,656 + PS417_18295 0.83 -2.3
3,989,656 + PS417_18295 0.83 -0.2
3,989,657 - PS417_18295 0.83 +0.0
3,989,657 - PS417_18295 0.83 -0.6
3,989,657 - PS417_18295 0.83 -0.1
3,989,657 - PS417_18295 0.83 -1.2
3,989,727 + PS417_18295 0.89 -0.8
3,989,879 + -1.8
3,989,955 + -1.2
3,990,189 + PS417_18300 0.44 +0.8
3,990,189 + PS417_18300 0.44 -0.6
3,990,190 - PS417_18300 0.44 -0.4
3,990,221 - PS417_18300 0.49 -0.5
3,990,426 + PS417_18300 0.79 -0.8
3,990,460 + PS417_18300 0.83 -1.0
3,990,534 + +1.1
3,991,123 + PS417_18310 0.39 -2.2
3,991,172 - PS417_18310 0.53 -1.7
3,991,240 - PS417_18310 0.72 -0.3

Or see this region's nucleotide sequence