Strain Fitness in Pseudomonas simiae WCS417 around PS417_09800

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_09795 and PS417_09800 are separated by 8 nucleotidesPS417_09800 and PS417_09805 are separated by 27 nucleotides PS417_09795: PS417_09795 - lipase, at 2,123,483 to 2,125,633 _09795 PS417_09800: PS417_09800 - cytosine deaminase, at 2,125,642 to 2,126,877 _09800 PS417_09805: PS417_09805 - CdaR family transcriptional regulator, at 2,126,905 to 2,128,110 _09805 Position (kb) 2125 2126 2127Strain fitness (log2 ratio) -2 -1 0 1 2at 2124.670 kb on + strand, within PS417_09795at 2124.670 kb on + strand, within PS417_09795at 2124.670 kb on + strand, within PS417_09795at 2124.749 kb on + strand, within PS417_09795at 2124.749 kb on + strand, within PS417_09795at 2124.765 kb on - strand, within PS417_09795at 2124.770 kb on + strand, within PS417_09795at 2125.196 kb on + strand, within PS417_09795at 2125.197 kb on - strand, within PS417_09795at 2125.197 kb on - strand, within PS417_09795at 2125.221 kb on + strand, within PS417_09795at 2125.704 kb on - strandat 2125.737 kb on - strandat 2126.055 kb on + strand, within PS417_09800at 2126.123 kb on + strand, within PS417_09800at 2126.275 kb on - strand, within PS417_09800at 2126.330 kb on + strand, within PS417_09800at 2126.957 kb on + strandat 2126.958 kb on - strandat 2127.061 kb on - strand, within PS417_09805at 2127.218 kb on + strand, within PS417_09805at 2127.219 kb on - strand, within PS417_09805at 2127.358 kb on + strand, within PS417_09805at 2127.666 kb on - strand, within PS417_09805at 2127.848 kb on + strand, within PS417_09805at 2127.849 kb on - strand, within PS417_09805at 2127.849 kb on - strand, within PS417_09805at 2127.849 kb on - strand, within PS417_09805

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
remove
2,124,670 + PS417_09795 0.55 -0.6
2,124,670 + PS417_09795 0.55 -0.2
2,124,670 + PS417_09795 0.55 -0.1
2,124,749 + PS417_09795 0.59 -0.3
2,124,749 + PS417_09795 0.59 +0.2
2,124,765 - PS417_09795 0.60 +2.2
2,124,770 + PS417_09795 0.60 -1.4
2,125,196 + PS417_09795 0.80 +0.6
2,125,197 - PS417_09795 0.80 +0.3
2,125,197 - PS417_09795 0.80 -1.8
2,125,221 + PS417_09795 0.81 +0.1
2,125,704 - +0.1
2,125,737 - -0.3
2,126,055 + PS417_09800 0.33 -0.6
2,126,123 + PS417_09800 0.39 +1.7
2,126,275 - PS417_09800 0.51 +0.9
2,126,330 + PS417_09800 0.56 +1.3
2,126,957 + +0.1
2,126,958 - +0.0
2,127,061 - PS417_09805 0.13 -1.8
2,127,218 + PS417_09805 0.26 -0.0
2,127,219 - PS417_09805 0.26 -0.5
2,127,358 + PS417_09805 0.38 -0.6
2,127,666 - PS417_09805 0.63 -0.5
2,127,848 + PS417_09805 0.78 -0.3
2,127,849 - PS417_09805 0.78 -1.0
2,127,849 - PS417_09805 0.78 +0.2
2,127,849 - PS417_09805 0.78 -0.4

Or see this region's nucleotide sequence