Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09795 and PS417_09800 are separated by 8 nucleotides PS417_09800 and PS417_09805 are separated by 27 nucleotides
PS417_09795: PS417_09795 - lipase, at 2,123,483 to 2,125,633
_09795
PS417_09800: PS417_09800 - cytosine deaminase, at 2,125,642 to 2,126,877
_09800
PS417_09805: PS417_09805 - CdaR family transcriptional regulator, at 2,126,905 to 2,128,110
_09805
Position (kb)
2125
2126
2127 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2124.670 kb on + strand, within PS417_09795 at 2124.670 kb on + strand, within PS417_09795 at 2124.670 kb on + strand, within PS417_09795 at 2124.749 kb on + strand, within PS417_09795 at 2124.749 kb on + strand, within PS417_09795 at 2124.765 kb on - strand, within PS417_09795 at 2124.770 kb on + strand, within PS417_09795 at 2125.196 kb on + strand, within PS417_09795 at 2125.197 kb on - strand, within PS417_09795 at 2125.197 kb on - strand, within PS417_09795 at 2125.221 kb on + strand, within PS417_09795 at 2125.704 kb on - strand at 2125.737 kb on - strand at 2126.055 kb on + strand, within PS417_09800 at 2126.123 kb on + strand, within PS417_09800 at 2126.275 kb on - strand, within PS417_09800 at 2126.330 kb on + strand, within PS417_09800 at 2126.957 kb on + strand at 2126.958 kb on - strand at 2127.061 kb on - strand, within PS417_09805 at 2127.218 kb on + strand, within PS417_09805 at 2127.219 kb on - strand, within PS417_09805 at 2127.358 kb on + strand, within PS417_09805 at 2127.666 kb on - strand, within PS417_09805 at 2127.848 kb on + strand, within PS417_09805 at 2127.849 kb on - strand, within PS417_09805 at 2127.849 kb on - strand, within PS417_09805 at 2127.849 kb on - strand, within PS417_09805
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 2,124,670 + PS417_09795 0.55 -0.6 2,124,670 + PS417_09795 0.55 -0.2 2,124,670 + PS417_09795 0.55 -0.1 2,124,749 + PS417_09795 0.59 -0.3 2,124,749 + PS417_09795 0.59 +0.2 2,124,765 - PS417_09795 0.60 +2.2 2,124,770 + PS417_09795 0.60 -1.4 2,125,196 + PS417_09795 0.80 +0.6 2,125,197 - PS417_09795 0.80 +0.3 2,125,197 - PS417_09795 0.80 -1.8 2,125,221 + PS417_09795 0.81 +0.1 2,125,704 - +0.1 2,125,737 - -0.3 2,126,055 + PS417_09800 0.33 -0.6 2,126,123 + PS417_09800 0.39 +1.7 2,126,275 - PS417_09800 0.51 +0.9 2,126,330 + PS417_09800 0.56 +1.3 2,126,957 + +0.1 2,126,958 - +0.0 2,127,061 - PS417_09805 0.13 -1.8 2,127,218 + PS417_09805 0.26 -0.0 2,127,219 - PS417_09805 0.26 -0.5 2,127,358 + PS417_09805 0.38 -0.6 2,127,666 - PS417_09805 0.63 -0.5 2,127,848 + PS417_09805 0.78 -0.3 2,127,849 - PS417_09805 0.78 -1.0 2,127,849 - PS417_09805 0.78 +0.2 2,127,849 - PS417_09805 0.78 -0.4
Or see this region's nucleotide sequence