Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09275 and PS417_09280 are separated by 83 nucleotides PS417_09280 and PS417_09290 are separated by 237 nucleotides
PS417_09275: PS417_09275 - peptidase S15, at 2,012,083 to 2,014,092
_09275
PS417_09280: PS417_09280 - LysR family transcriptional regulator, at 2,014,176 to 2,015,111
_09280
PS417_09290: PS417_09290 - catalase, at 2,015,349 to 2,016,515
_09290
Position (kb)
2014
2015
2016 Strain fitness (log2 ratio)
-2
-1
0
1 at 2013.345 kb on + strand, within PS417_09275 at 2013.345 kb on + strand, within PS417_09275 at 2013.436 kb on + strand, within PS417_09275 at 2013.436 kb on + strand, within PS417_09275 at 2014.091 kb on - strand at 2014.091 kb on - strand at 2014.091 kb on - strand at 2014.091 kb on - strand at 2014.091 kb on - strand at 2014.384 kb on + strand at 2014.384 kb on + strand, within PS417_09280 at 2014.389 kb on + strand, within PS417_09280 at 2014.390 kb on - strand, within PS417_09280 at 2014.390 kb on - strand, within PS417_09280 at 2014.503 kb on - strand, within PS417_09280 at 2014.503 kb on - strand, within PS417_09280 at 2014.605 kb on + strand, within PS417_09280 at 2014.606 kb on - strand, within PS417_09280 at 2014.606 kb on - strand, within PS417_09280 at 2014.713 kb on + strand, within PS417_09280 at 2014.845 kb on + strand, within PS417_09280 at 2014.846 kb on - strand, within PS417_09280 at 2015.208 kb on + strand at 2015.209 kb on - strand at 2015.209 kb on - strand at 2015.262 kb on + strand at 2015.275 kb on + strand at 2015.290 kb on + strand at 2015.640 kb on + strand, within PS417_09290 at 2015.641 kb on - strand, within PS417_09290 at 2015.948 kb on - strand, within PS417_09290 at 2015.955 kb on + strand, within PS417_09290 at 2015.955 kb on + strand, within PS417_09290
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 2,013,345 + PS417_09275 0.63 -0.1 2,013,345 + PS417_09275 0.63 -1.9 2,013,436 + PS417_09275 0.67 -0.2 2,013,436 + PS417_09275 0.67 +0.4 2,014,091 - -0.5 2,014,091 - -0.2 2,014,091 - -0.3 2,014,091 - +1.1 2,014,091 - -0.3 2,014,384 + +0.1 2,014,384 + PS417_09280 0.22 +0.5 2,014,389 + PS417_09280 0.23 -1.4 2,014,390 - PS417_09280 0.23 +0.0 2,014,390 - PS417_09280 0.23 -2.1 2,014,503 - PS417_09280 0.35 +0.2 2,014,503 - PS417_09280 0.35 -1.4 2,014,605 + PS417_09280 0.46 -1.8 2,014,606 - PS417_09280 0.46 +0.0 2,014,606 - PS417_09280 0.46 -0.5 2,014,713 + PS417_09280 0.57 -0.4 2,014,845 + PS417_09280 0.71 -1.0 2,014,846 - PS417_09280 0.72 +0.0 2,015,208 + +1.1 2,015,209 - +0.4 2,015,209 - +0.1 2,015,262 + -1.5 2,015,275 + -0.7 2,015,290 + -0.0 2,015,640 + PS417_09290 0.25 -1.1 2,015,641 - PS417_09290 0.25 +0.5 2,015,948 - PS417_09290 0.51 -0.3 2,015,955 + PS417_09290 0.52 -0.6 2,015,955 + PS417_09290 0.52 +0.1
Or see this region's nucleotide sequence