Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08035 and PS417_08040 are separated by 122 nucleotides PS417_08040 and PS417_08045 are separated by 158 nucleotides
PS417_08035: PS417_08035 - adenine transporter (MFS superfamily) (from data) , at 1,757,607 to 1,758,797
_08035
PS417_08040: PS417_08040 - hypothetical protein, at 1,758,920 to 1,759,753
_08040
PS417_08045: PS417_08045 - uracil permease, at 1,759,912 to 1,761,414
_08045
Position (kb)
1758
1759
1760 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1758.140 kb on - strand, within PS417_08035 at 1758.223 kb on + strand, within PS417_08035 at 1758.223 kb on + strand, within PS417_08035 at 1758.224 kb on - strand, within PS417_08035 at 1758.224 kb on - strand, within PS417_08035 at 1758.224 kb on - strand, within PS417_08035 at 1758.342 kb on + strand, within PS417_08035 at 1758.343 kb on - strand, within PS417_08035 at 1758.343 kb on - strand, within PS417_08035 at 1758.346 kb on + strand, within PS417_08035 at 1758.346 kb on + strand, within PS417_08035 at 1758.347 kb on - strand, within PS417_08035 at 1758.347 kb on - strand, within PS417_08035 at 1758.347 kb on - strand, within PS417_08035 at 1758.378 kb on + strand, within PS417_08035 at 1758.379 kb on - strand, within PS417_08035 at 1758.379 kb on - strand, within PS417_08035 at 1758.444 kb on + strand, within PS417_08035 at 1758.641 kb on - strand, within PS417_08035 at 1758.641 kb on - strand, within PS417_08035 at 1758.836 kb on + strand at 1758.836 kb on + strand at 1758.836 kb on + strand at 1758.837 kb on - strand at 1758.853 kb on - strand at 1758.922 kb on - strand at 1759.023 kb on + strand, within PS417_08040 at 1759.023 kb on + strand, within PS417_08040 at 1759.023 kb on + strand, within PS417_08040 at 1759.024 kb on - strand, within PS417_08040 at 1759.138 kb on - strand, within PS417_08040 at 1759.144 kb on + strand, within PS417_08040 at 1759.213 kb on - strand, within PS417_08040 at 1759.213 kb on - strand, within PS417_08040 at 1759.213 kb on - strand, within PS417_08040 at 1759.213 kb on - strand, within PS417_08040 at 1759.213 kb on - strand, within PS417_08040 at 1759.213 kb on - strand, within PS417_08040 at 1759.279 kb on - strand, within PS417_08040 at 1759.279 kb on - strand, within PS417_08040 at 1759.281 kb on + strand, within PS417_08040 at 1759.282 kb on - strand, within PS417_08040 at 1759.282 kb on - strand, within PS417_08040 at 1759.282 kb on - strand, within PS417_08040 at 1759.282 kb on - strand, within PS417_08040 at 1759.282 kb on - strand, within PS417_08040 at 1759.408 kb on - strand, within PS417_08040 at 1759.459 kb on - strand, within PS417_08040 at 1759.459 kb on - strand, within PS417_08040 at 1759.483 kb on - strand, within PS417_08040 at 1759.570 kb on - strand, within PS417_08040 at 1759.599 kb on + strand, within PS417_08040 at 1759.600 kb on - strand, within PS417_08040 at 1759.717 kb on + strand at 1759.739 kb on + strand at 1759.740 kb on - strand at 1759.757 kb on + strand at 1759.875 kb on - strand at 1759.918 kb on - strand at 1759.981 kb on + strand at 1759.997 kb on + strand at 1759.997 kb on + strand at 1759.997 kb on + strand at 1759.998 kb on - strand at 1759.998 kb on - strand at 1759.998 kb on - strand at 1759.998 kb on - strand at 1759.998 kb on - strand at 1759.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 1,758,140 - PS417_08035 0.45 -0.2 1,758,223 + PS417_08035 0.52 +0.9 1,758,223 + PS417_08035 0.52 -0.4 1,758,224 - PS417_08035 0.52 -0.1 1,758,224 - PS417_08035 0.52 -2.7 1,758,224 - PS417_08035 0.52 +1.1 1,758,342 + PS417_08035 0.62 -1.8 1,758,343 - PS417_08035 0.62 +0.4 1,758,343 - PS417_08035 0.62 -0.7 1,758,346 + PS417_08035 0.62 +1.0 1,758,346 + PS417_08035 0.62 +0.4 1,758,347 - PS417_08035 0.62 -0.4 1,758,347 - PS417_08035 0.62 -2.5 1,758,347 - PS417_08035 0.62 -0.3 1,758,378 + PS417_08035 0.65 -0.1 1,758,379 - PS417_08035 0.65 -0.3 1,758,379 - PS417_08035 0.65 -1.1 1,758,444 + PS417_08035 0.70 +0.9 1,758,641 - PS417_08035 0.87 -0.1 1,758,641 - PS417_08035 0.87 -1.4 1,758,836 + +0.6 1,758,836 + -3.0 1,758,836 + +0.4 1,758,837 - +0.2 1,758,853 - -0.6 1,758,922 - -0.9 1,759,023 + PS417_08040 0.12 -5.1 1,759,023 + PS417_08040 0.12 +0.1 1,759,023 + PS417_08040 0.12 +0.5 1,759,024 - PS417_08040 0.12 +0.7 1,759,138 - PS417_08040 0.26 -0.8 1,759,144 + PS417_08040 0.27 -1.0 1,759,213 - PS417_08040 0.35 -0.4 1,759,213 - PS417_08040 0.35 -0.1 1,759,213 - PS417_08040 0.35 +0.2 1,759,213 - PS417_08040 0.35 -0.2 1,759,213 - PS417_08040 0.35 -1.0 1,759,213 - PS417_08040 0.35 -2.1 1,759,279 - PS417_08040 0.43 -1.7 1,759,279 - PS417_08040 0.43 -0.8 1,759,281 + PS417_08040 0.43 -2.0 1,759,282 - PS417_08040 0.43 -1.0 1,759,282 - PS417_08040 0.43 -1.5 1,759,282 - PS417_08040 0.43 -0.3 1,759,282 - PS417_08040 0.43 -0.4 1,759,282 - PS417_08040 0.43 +0.2 1,759,408 - PS417_08040 0.59 -0.7 1,759,459 - PS417_08040 0.65 +0.3 1,759,459 - PS417_08040 0.65 +1.4 1,759,483 - PS417_08040 0.68 -0.9 1,759,570 - PS417_08040 0.78 +0.0 1,759,599 + PS417_08040 0.81 -0.6 1,759,600 - PS417_08040 0.82 +0.0 1,759,717 + -0.0 1,759,739 + +0.2 1,759,740 - -0.1 1,759,757 + +1.0 1,759,875 - +0.9 1,759,918 - -0.5 1,759,981 + -0.4 1,759,997 + -1.7 1,759,997 + -1.4 1,759,997 + -0.1 1,759,998 - -0.3 1,759,998 - +0.3 1,759,998 - +0.7 1,759,998 - +1.2 1,759,998 - -0.6 1,759,998 - -2.9
Or see this region's nucleotide sequence