Strain Fitness in Pseudomonas simiae WCS417 around PS417_04230

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04225 and PS417_04230 are separated by 58 nucleotidesPS417_04230 and PS417_04235 are separated by 157 nucleotides PS417_04225: PS417_04225 - conjugal transfer protein TraR, at 946,784 to 947,830 _04225 PS417_04230: PS417_04230 - lipoprotein, at 947,889 to 948,260 _04230 PS417_04235: PS417_04235 - glutamyl-tRNA amidotransferase, at 948,418 to 949,863 _04235 Position (kb) 947 948 949Strain fitness (log2 ratio) -2 -1 0 1 2 3at 946.915 kb on + strand, within PS417_04225at 946.915 kb on + strand, within PS417_04225at 947.620 kb on + strand, within PS417_04225at 948.131 kb on + strand, within PS417_04230at 948.132 kb on - strand, within PS417_04230at 948.132 kb on - strand, within PS417_04230at 948.157 kb on + strand, within PS417_04230at 948.157 kb on + strand, within PS417_04230at 948.158 kb on - strand, within PS417_04230at 948.158 kb on - strand, within PS417_04230at 948.312 kb on + strandat 948.313 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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946,915 + PS417_04225 0.13 -0.7
946,915 + PS417_04225 0.13 -0.5
947,620 + PS417_04225 0.80 +0.9
948,131 + PS417_04230 0.65 +1.3
948,132 - PS417_04230 0.65 +0.4
948,132 - PS417_04230 0.65 -1.1
948,157 + PS417_04230 0.72 -1.1
948,157 + PS417_04230 0.72 +3.4
948,158 - PS417_04230 0.72 +1.5
948,158 - PS417_04230 0.72 -0.5
948,312 + +0.1
948,313 - -2.3

Or see this region's nucleotide sequence