Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02980 and PS417_02985 are separated by 53 nucleotides PS417_02985 and PS417_02990 are separated by 298 nucleotides
PS417_02980: PS417_02980 - chemotaxis protein, at 680,503 to 682,464
_02980
PS417_02985: PS417_02985 - diguanylate cyclase, at 682,518 to 684,188
_02985
PS417_02990: PS417_02990 - hypothetical protein, at 684,487 to 685,554
_02990
Position (kb) 682
683
684
685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 682.006 kb on + strand, within PS417_02980 at 682.359 kb on - strand at 682.599 kb on - strand at 682.840 kb on + strand, within PS417_02985 at 682.919 kb on + strand, within PS417_02985 at 682.919 kb on + strand, within PS417_02985 at 682.920 kb on - strand, within PS417_02985 at 683.035 kb on + strand, within PS417_02985 at 683.036 kb on - strand, within PS417_02985 at 683.209 kb on + strand, within PS417_02985 at 683.209 kb on + strand, within PS417_02985 at 683.209 kb on + strand, within PS417_02985 at 683.209 kb on + strand, within PS417_02985 at 683.209 kb on + strand, within PS417_02985 at 683.209 kb on + strand, within PS417_02985 at 683.230 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.288 kb on - strand, within PS417_02985 at 683.288 kb on - strand, within PS417_02985 at 683.288 kb on - strand, within PS417_02985 at 683.288 kb on - strand, within PS417_02985 at 683.444 kb on - strand, within PS417_02985 at 683.812 kb on + strand, within PS417_02985 at 683.812 kb on + strand, within PS417_02985 at 684.198 kb on - strand at 684.200 kb on + strand at 684.201 kb on - strand at 684.201 kb on - strand at 684.201 kb on - strand at 684.236 kb on - strand at 684.270 kb on + strand at 684.271 kb on - strand at 684.271 kb on - strand at 684.279 kb on - strand at 684.346 kb on + strand at 684.347 kb on - strand at 684.348 kb on + strand at 684.349 kb on - strand at 684.560 kb on - strand at 684.610 kb on + strand, within PS417_02990 at 684.727 kb on + strand, within PS417_02990 at 684.728 kb on - strand, within PS417_02990 at 684.729 kb on + strand, within PS417_02990 at 685.081 kb on + strand, within PS417_02990
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 682,006 + PS417_02980 0.77 +1.0 682,359 - -0.1 682,599 - +3.6 682,840 + PS417_02985 0.19 -0.5 682,919 + PS417_02985 0.24 +2.0 682,919 + PS417_02985 0.24 +1.5 682,920 - PS417_02985 0.24 +1.6 683,035 + PS417_02985 0.31 +2.2 683,036 - PS417_02985 0.31 +2.8 683,209 + PS417_02985 0.41 +2.7 683,209 + PS417_02985 0.41 +2.1 683,209 + PS417_02985 0.41 +2.8 683,209 + PS417_02985 0.41 +2.5 683,209 + PS417_02985 0.41 +1.9 683,209 + PS417_02985 0.41 +2.0 683,230 + PS417_02985 0.43 +1.7 683,287 + PS417_02985 0.46 +2.3 683,287 + PS417_02985 0.46 +1.5 683,287 + PS417_02985 0.46 +2.5 683,287 + PS417_02985 0.46 +1.7 683,287 + PS417_02985 0.46 +2.4 683,287 + PS417_02985 0.46 +2.0 683,287 + PS417_02985 0.46 +2.2 683,287 + PS417_02985 0.46 +1.5 683,288 - PS417_02985 0.46 +2.8 683,288 - PS417_02985 0.46 +2.7 683,288 - PS417_02985 0.46 +1.8 683,288 - PS417_02985 0.46 +3.4 683,444 - PS417_02985 0.55 +2.7 683,812 + PS417_02985 0.77 +2.6 683,812 + PS417_02985 0.77 +0.7 684,198 - +2.2 684,200 + +2.1 684,201 - +0.2 684,201 - +0.8 684,201 - +1.2 684,236 - +1.6 684,270 + +2.1 684,271 - -0.7 684,271 - -1.8 684,279 - -2.8 684,346 + +1.1 684,347 - -3.5 684,348 + +0.8 684,349 - -3.6 684,560 - -1.8 684,610 + PS417_02990 0.12 +2.0 684,727 + PS417_02990 0.22 -1.2 684,728 - PS417_02990 0.23 -1.1 684,729 + PS417_02990 0.23 -1.7 685,081 + PS417_02990 0.56 -0.0
Or see this region's nucleotide sequence