Strain Fitness in Pseudomonas simiae WCS417 around PS417_27140

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_27135 and PS417_27140 are separated by 597 nucleotidesPS417_27140 and PS417_27145 are separated by 220 nucleotidesPS417_27145 and PS417_27150 are separated by 109 nucleotides PS417_27135: PS417_27135 - glutamine synthetase, at 5,857,994 to 5,859,352 _27135 PS417_27140: PS417_27140 - Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data), at 5,859,950 to 5,861,326 _27140 PS417_27145: PS417_27145 - TetR family transcriptional regulator, at 5,861,547 to 5,862,188 _27145 PS417_27150: PS417_27150 - transporter, at 5,862,298 to 5,862,513 _27150 Position (kb) 5859 5860 5861 5862Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5859.353 kb on - strandat 5859.353 kb on - strandat 5859.687 kb on + strandat 5859.688 kb on - strandat 5859.688 kb on - strandat 5860.026 kb on + strandat 5860.131 kb on + strand, within PS417_27140at 5860.131 kb on + strand, within PS417_27140at 5860.132 kb on - strand, within PS417_27140at 5860.964 kb on - strand, within PS417_27140at 5861.009 kb on - strand, within PS417_27140at 5861.213 kb on + strandat 5861.214 kb on - strandat 5861.214 kb on - strandat 5861.225 kb on - strandat 5861.225 kb on - strandat 5861.225 kb on - strandat 5861.228 kb on + strandat 5861.300 kb on + strandat 5861.301 kb on - strandat 5861.324 kb on + strandat 5861.443 kb on + strandat 5861.516 kb on + strandat 5861.516 kb on + strandat 5861.517 kb on - strandat 5861.517 kb on - strandat 5861.517 kb on - strandat 5861.536 kb on - strandat 5861.536 kb on - strandat 5861.668 kb on - strand, within PS417_27145at 5861.709 kb on + strand, within PS417_27145at 5861.835 kb on + strand, within PS417_27145at 5861.836 kb on - strand, within PS417_27145at 5861.836 kb on - strand, within PS417_27145at 5861.861 kb on + strand, within PS417_27145at 5861.861 kb on + strand, within PS417_27145at 5861.862 kb on - strand, within PS417_27145at 5861.862 kb on - strand, within PS417_27145at 5861.865 kb on + strand, within PS417_27145at 5861.865 kb on + strand, within PS417_27145at 5861.865 kb on + strand, within PS417_27145at 5861.865 kb on + strand, within PS417_27145at 5861.865 kb on + strand, within PS417_27145at 5861.866 kb on - strand, within PS417_27145at 5861.866 kb on - strand, within PS417_27145at 5861.866 kb on - strand, within PS417_27145at 5861.866 kb on - strand, within PS417_27145at 5861.866 kb on - strand, within PS417_27145at 5862.061 kb on - strand, within PS417_27145at 5862.092 kb on + strand, within PS417_27145at 5862.135 kb on + strandat 5862.135 kb on + strandat 5862.135 kb on + strandat 5862.135 kb on + strandat 5862.136 kb on - strandat 5862.136 kb on - strandat 5862.136 kb on - strandat 5862.136 kb on - strandat 5862.136 kb on - strandat 5862.147 kb on + strandat 5862.147 kb on + strandat 5862.147 kb on + strandat 5862.159 kb on + strandat 5862.160 kb on - strandat 5862.160 kb on - strandat 5862.160 kb on - strandat 5862.186 kb on + strandat 5862.187 kb on - strandat 5862.187 kb on - strandat 5862.196 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
remove
5,859,353 - +1.0
5,859,353 - -0.6
5,859,687 + +0.1
5,859,688 - -0.5
5,859,688 - -0.0
5,860,026 + -0.8
5,860,131 + PS417_27140 0.13 -3.0
5,860,131 + PS417_27140 0.13 -0.3
5,860,132 - PS417_27140 0.13 -3.0
5,860,964 - PS417_27140 0.74 -0.7
5,861,009 - PS417_27140 0.77 +0.7
5,861,213 + -1.3
5,861,214 - +0.4
5,861,214 - +0.3
5,861,225 - -0.7
5,861,225 - -2.0
5,861,225 - -0.8
5,861,228 + -1.1
5,861,300 + -2.9
5,861,301 - -0.5
5,861,324 + -0.2
5,861,443 + +0.8
5,861,516 + -0.9
5,861,516 + -0.9
5,861,517 - +0.5
5,861,517 - -0.9
5,861,517 - +0.2
5,861,536 - +1.4
5,861,536 - +0.6
5,861,668 - PS417_27145 0.19 +1.2
5,861,709 + PS417_27145 0.25 -0.1
5,861,835 + PS417_27145 0.45 -0.0
5,861,836 - PS417_27145 0.45 +1.3
5,861,836 - PS417_27145 0.45 -1.2
5,861,861 + PS417_27145 0.49 +0.4
5,861,861 + PS417_27145 0.49 +0.6
5,861,862 - PS417_27145 0.49 +0.2
5,861,862 - PS417_27145 0.49 -0.7
5,861,865 + PS417_27145 0.50 -0.0
5,861,865 + PS417_27145 0.50 -0.5
5,861,865 + PS417_27145 0.50 +0.8
5,861,865 + PS417_27145 0.50 +1.4
5,861,865 + PS417_27145 0.50 +0.7
5,861,866 - PS417_27145 0.50 -0.2
5,861,866 - PS417_27145 0.50 -1.0
5,861,866 - PS417_27145 0.50 -0.4
5,861,866 - PS417_27145 0.50 -2.1
5,861,866 - PS417_27145 0.50 -3.0
5,862,061 - PS417_27145 0.80 +0.1
5,862,092 + PS417_27145 0.85 -0.0
5,862,135 + +1.4
5,862,135 + -1.1
5,862,135 + -0.2
5,862,135 + -0.6
5,862,136 - +3.0
5,862,136 - +0.3
5,862,136 - +1.0
5,862,136 - +0.5
5,862,136 - -1.7
5,862,147 + -0.6
5,862,147 + -1.1
5,862,147 + +1.3
5,862,159 + -0.6
5,862,160 - -0.3
5,862,160 - -1.8
5,862,160 - +0.7
5,862,186 + +0.2
5,862,187 - -1.0
5,862,187 - +1.3
5,862,196 - +0.3

Or see this region's nucleotide sequence