Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27135 and PS417_27140 are separated by 597 nucleotides PS417_27140 and PS417_27145 are separated by 220 nucleotides PS417_27145 and PS417_27150 are separated by 109 nucleotides
PS417_27135: PS417_27135 - glutamine synthetase, at 5,857,994 to 5,859,352
_27135
PS417_27140: PS417_27140 - Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) , at 5,859,950 to 5,861,326
_27140
PS417_27145: PS417_27145 - TetR family transcriptional regulator, at 5,861,547 to 5,862,188
_27145
PS417_27150: PS417_27150 - transporter, at 5,862,298 to 5,862,513
_27150
Position (kb)
5859
5860
5861
5862 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 5859.353 kb on - strand at 5859.353 kb on - strand at 5859.687 kb on + strand at 5859.688 kb on - strand at 5859.688 kb on - strand at 5860.026 kb on + strand at 5860.131 kb on + strand, within PS417_27140 at 5860.131 kb on + strand, within PS417_27140 at 5860.132 kb on - strand, within PS417_27140 at 5860.964 kb on - strand, within PS417_27140 at 5861.009 kb on - strand, within PS417_27140 at 5861.213 kb on + strand at 5861.214 kb on - strand at 5861.214 kb on - strand at 5861.225 kb on - strand at 5861.225 kb on - strand at 5861.225 kb on - strand at 5861.228 kb on + strand at 5861.300 kb on + strand at 5861.301 kb on - strand at 5861.324 kb on + strand at 5861.443 kb on + strand at 5861.516 kb on + strand at 5861.516 kb on + strand at 5861.517 kb on - strand at 5861.517 kb on - strand at 5861.517 kb on - strand at 5861.536 kb on - strand at 5861.536 kb on - strand at 5861.668 kb on - strand, within PS417_27145 at 5861.709 kb on + strand, within PS417_27145 at 5861.835 kb on + strand, within PS417_27145 at 5861.836 kb on - strand, within PS417_27145 at 5861.836 kb on - strand, within PS417_27145 at 5861.861 kb on + strand, within PS417_27145 at 5861.861 kb on + strand, within PS417_27145 at 5861.862 kb on - strand, within PS417_27145 at 5861.862 kb on - strand, within PS417_27145 at 5861.865 kb on + strand, within PS417_27145 at 5861.865 kb on + strand, within PS417_27145 at 5861.865 kb on + strand, within PS417_27145 at 5861.865 kb on + strand, within PS417_27145 at 5861.865 kb on + strand, within PS417_27145 at 5861.866 kb on - strand, within PS417_27145 at 5861.866 kb on - strand, within PS417_27145 at 5861.866 kb on - strand, within PS417_27145 at 5861.866 kb on - strand, within PS417_27145 at 5861.866 kb on - strand, within PS417_27145 at 5862.061 kb on - strand, within PS417_27145 at 5862.092 kb on + strand, within PS417_27145 at 5862.135 kb on + strand at 5862.135 kb on + strand at 5862.135 kb on + strand at 5862.135 kb on + strand at 5862.136 kb on - strand at 5862.136 kb on - strand at 5862.136 kb on - strand at 5862.136 kb on - strand at 5862.136 kb on - strand at 5862.147 kb on + strand at 5862.147 kb on + strand at 5862.147 kb on + strand at 5862.159 kb on + strand at 5862.160 kb on - strand at 5862.160 kb on - strand at 5862.160 kb on - strand at 5862.186 kb on + strand at 5862.187 kb on - strand at 5862.187 kb on - strand at 5862.196 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,859,353 - +1.0 5,859,353 - -0.6 5,859,687 + +0.1 5,859,688 - -0.5 5,859,688 - -0.0 5,860,026 + -0.8 5,860,131 + PS417_27140 0.13 -3.0 5,860,131 + PS417_27140 0.13 -0.3 5,860,132 - PS417_27140 0.13 -3.0 5,860,964 - PS417_27140 0.74 -0.7 5,861,009 - PS417_27140 0.77 +0.7 5,861,213 + -1.3 5,861,214 - +0.4 5,861,214 - +0.3 5,861,225 - -0.7 5,861,225 - -2.0 5,861,225 - -0.8 5,861,228 + -1.1 5,861,300 + -2.9 5,861,301 - -0.5 5,861,324 + -0.2 5,861,443 + +0.8 5,861,516 + -0.9 5,861,516 + -0.9 5,861,517 - +0.5 5,861,517 - -0.9 5,861,517 - +0.2 5,861,536 - +1.4 5,861,536 - +0.6 5,861,668 - PS417_27145 0.19 +1.2 5,861,709 + PS417_27145 0.25 -0.1 5,861,835 + PS417_27145 0.45 -0.0 5,861,836 - PS417_27145 0.45 +1.3 5,861,836 - PS417_27145 0.45 -1.2 5,861,861 + PS417_27145 0.49 +0.4 5,861,861 + PS417_27145 0.49 +0.6 5,861,862 - PS417_27145 0.49 +0.2 5,861,862 - PS417_27145 0.49 -0.7 5,861,865 + PS417_27145 0.50 -0.0 5,861,865 + PS417_27145 0.50 -0.5 5,861,865 + PS417_27145 0.50 +0.8 5,861,865 + PS417_27145 0.50 +1.4 5,861,865 + PS417_27145 0.50 +0.7 5,861,866 - PS417_27145 0.50 -0.2 5,861,866 - PS417_27145 0.50 -1.0 5,861,866 - PS417_27145 0.50 -0.4 5,861,866 - PS417_27145 0.50 -2.1 5,861,866 - PS417_27145 0.50 -3.0 5,862,061 - PS417_27145 0.80 +0.1 5,862,092 + PS417_27145 0.85 -0.0 5,862,135 + +1.4 5,862,135 + -1.1 5,862,135 + -0.2 5,862,135 + -0.6 5,862,136 - +3.0 5,862,136 - +0.3 5,862,136 - +1.0 5,862,136 - +0.5 5,862,136 - -1.7 5,862,147 + -0.6 5,862,147 + -1.1 5,862,147 + +1.3 5,862,159 + -0.6 5,862,160 - -0.3 5,862,160 - -1.8 5,862,160 - +0.7 5,862,186 + +0.2 5,862,187 - -1.0 5,862,187 - +1.3 5,862,196 - +0.3
Or see this region's nucleotide sequence