Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26170 and PS417_26175 are separated by 10 nucleotides PS417_26175 and PS417_26180 are separated by 123 nucleotides
PS417_26170: PS417_26170 - formyltetrahydrofolate deformylase, at 5,654,431 to 5,655,288
_26170
PS417_26175: PS417_26175 - sarcosine oxidase subunit gamma, at 5,655,299 to 5,655,931
_26175
PS417_26180: PS417_26180 - sarcosine oxidase subunit alpha, at 5,656,055 to 5,659,072
_26180
Position (kb) 5655
5656 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5654.330 kb on + strand at 5654.331 kb on - strand at 5654.331 kb on - strand at 5654.333 kb on + strand at 5654.334 kb on - strand at 5654.334 kb on - strand at 5654.433 kb on - strand at 5654.618 kb on + strand, within PS417_26170 at 5654.618 kb on + strand, within PS417_26170 at 5654.619 kb on - strand, within PS417_26170 at 5654.619 kb on - strand, within PS417_26170 at 5654.658 kb on - strand, within PS417_26170 at 5654.658 kb on - strand, within PS417_26170 at 5654.658 kb on - strand, within PS417_26170 at 5654.769 kb on - strand, within PS417_26170 at 5654.868 kb on - strand, within PS417_26170 at 5654.868 kb on - strand, within PS417_26170 at 5654.967 kb on - strand, within PS417_26170 at 5655.027 kb on - strand, within PS417_26170 at 5655.027 kb on - strand, within PS417_26170 at 5655.184 kb on - strand, within PS417_26170 at 5655.188 kb on + strand, within PS417_26170 at 5655.188 kb on + strand, within PS417_26170 at 5655.189 kb on - strand, within PS417_26170 at 5655.189 kb on - strand, within PS417_26170 at 5655.189 kb on - strand, within PS417_26170 at 5655.293 kb on + strand at 5655.486 kb on + strand, within PS417_26175 at 5655.486 kb on + strand, within PS417_26175 at 5655.914 kb on + strand at 5655.914 kb on + strand at 5655.914 kb on + strand at 5655.914 kb on + strand at 5655.914 kb on + strand at 5655.915 kb on - strand at 5655.915 kb on - strand at 5655.915 kb on - strand at 5655.932 kb on - strand at 5656.342 kb on + strand at 5656.409 kb on - strand, within PS417_26180 at 5656.502 kb on + strand, within PS417_26180 at 5656.503 kb on - strand, within PS417_26180 at 5656.571 kb on + strand, within PS417_26180 at 5656.585 kb on - strand, within PS417_26180 at 5656.640 kb on + strand, within PS417_26180 at 5656.671 kb on - strand, within PS417_26180 at 5656.797 kb on + strand, within PS417_26180 at 5656.798 kb on - strand, within PS417_26180 at 5656.830 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,654,330 + +1.1 5,654,331 - +1.7 5,654,331 - +0.4 5,654,333 + +0.4 5,654,334 - -0.1 5,654,334 - -2.7 5,654,433 - -1.0 5,654,618 + PS417_26170 0.22 -1.5 5,654,618 + PS417_26170 0.22 +1.9 5,654,619 - PS417_26170 0.22 +0.8 5,654,619 - PS417_26170 0.22 +0.1 5,654,658 - PS417_26170 0.26 -2.2 5,654,658 - PS417_26170 0.26 +0.6 5,654,658 - PS417_26170 0.26 -0.4 5,654,769 - PS417_26170 0.39 +1.4 5,654,868 - PS417_26170 0.51 -0.2 5,654,868 - PS417_26170 0.51 -1.3 5,654,967 - PS417_26170 0.62 -1.3 5,655,027 - PS417_26170 0.69 +0.7 5,655,027 - PS417_26170 0.69 -0.2 5,655,184 - PS417_26170 0.88 +1.6 5,655,188 + PS417_26170 0.88 -1.7 5,655,188 + PS417_26170 0.88 -4.3 5,655,189 - PS417_26170 0.88 +0.7 5,655,189 - PS417_26170 0.88 +0.3 5,655,189 - PS417_26170 0.88 +0.9 5,655,293 + +4.4 5,655,486 + PS417_26175 0.30 +2.9 5,655,486 + PS417_26175 0.30 -0.1 5,655,914 + +0.3 5,655,914 + -0.9 5,655,914 + -0.2 5,655,914 + +1.3 5,655,914 + -1.7 5,655,915 - +2.6 5,655,915 - +0.2 5,655,915 - -0.9 5,655,932 - +0.3 5,656,342 + -0.6 5,656,409 - PS417_26180 0.12 -0.8 5,656,502 + PS417_26180 0.15 +1.2 5,656,503 - PS417_26180 0.15 -0.3 5,656,571 + PS417_26180 0.17 +1.7 5,656,585 - PS417_26180 0.18 -0.8 5,656,640 + PS417_26180 0.19 +0.4 5,656,671 - PS417_26180 0.20 +3.3 5,656,797 + PS417_26180 0.25 +0.1 5,656,798 - PS417_26180 0.25 -1.3 5,656,830 + -0.1
Or see this region's nucleotide sequence