Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26165 and PS417_26170 are separated by 196 nucleotides PS417_26170 and PS417_26175 are separated by 10 nucleotides PS417_26175 and PS417_26180 are separated by 123 nucleotides
PS417_26165: PS417_26165 - aldehyde dismutase, at 5,653,035 to 5,654,234
_26165
PS417_26170: PS417_26170 - formyltetrahydrofolate deformylase, at 5,654,431 to 5,655,288
_26170
PS417_26175: PS417_26175 - sarcosine oxidase subunit gamma, at 5,655,299 to 5,655,931
_26175
PS417_26180: PS417_26180 - sarcosine oxidase subunit alpha, at 5,656,055 to 5,659,072
_26180
Position (kb) 5654
5655
5656 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5653.663 kb on + strand, within PS417_26165 at 5653.663 kb on + strand, within PS417_26165 at 5653.664 kb on - strand, within PS417_26165 at 5653.819 kb on + strand, within PS417_26165 at 5653.820 kb on - strand, within PS417_26165 at 5653.948 kb on - strand, within PS417_26165 at 5654.184 kb on + strand at 5654.210 kb on - strand at 5654.296 kb on - strand at 5654.330 kb on + strand at 5654.331 kb on - strand at 5654.331 kb on - strand at 5654.333 kb on + strand at 5654.334 kb on - strand at 5654.334 kb on - strand at 5654.433 kb on - strand at 5654.618 kb on + strand, within PS417_26170 at 5654.618 kb on + strand, within PS417_26170 at 5654.619 kb on - strand, within PS417_26170 at 5654.619 kb on - strand, within PS417_26170 at 5654.658 kb on - strand, within PS417_26170 at 5654.658 kb on - strand, within PS417_26170 at 5654.658 kb on - strand, within PS417_26170 at 5654.769 kb on - strand, within PS417_26170 at 5654.868 kb on - strand, within PS417_26170 at 5654.868 kb on - strand, within PS417_26170 at 5654.967 kb on - strand, within PS417_26170 at 5655.027 kb on - strand, within PS417_26170 at 5655.027 kb on - strand, within PS417_26170 at 5655.184 kb on - strand, within PS417_26170 at 5655.188 kb on + strand, within PS417_26170 at 5655.188 kb on + strand, within PS417_26170 at 5655.189 kb on - strand, within PS417_26170 at 5655.189 kb on - strand, within PS417_26170 at 5655.189 kb on - strand, within PS417_26170 at 5655.293 kb on + strand at 5655.486 kb on + strand, within PS417_26175 at 5655.486 kb on + strand, within PS417_26175 at 5655.914 kb on + strand at 5655.914 kb on + strand at 5655.914 kb on + strand at 5655.914 kb on + strand at 5655.914 kb on + strand at 5655.915 kb on - strand at 5655.915 kb on - strand at 5655.915 kb on - strand at 5655.932 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,653,663 + PS417_26165 0.52 -0.6 5,653,663 + PS417_26165 0.52 +0.4 5,653,664 - PS417_26165 0.52 -0.5 5,653,819 + PS417_26165 0.65 +2.3 5,653,820 - PS417_26165 0.65 -0.5 5,653,948 - PS417_26165 0.76 -0.3 5,654,184 + +0.5 5,654,210 - +0.4 5,654,296 - +0.6 5,654,330 + +1.1 5,654,331 - +1.7 5,654,331 - +0.4 5,654,333 + +0.4 5,654,334 - -0.1 5,654,334 - -2.7 5,654,433 - -1.0 5,654,618 + PS417_26170 0.22 -1.5 5,654,618 + PS417_26170 0.22 +1.9 5,654,619 - PS417_26170 0.22 +0.8 5,654,619 - PS417_26170 0.22 +0.1 5,654,658 - PS417_26170 0.26 -2.2 5,654,658 - PS417_26170 0.26 +0.6 5,654,658 - PS417_26170 0.26 -0.4 5,654,769 - PS417_26170 0.39 +1.4 5,654,868 - PS417_26170 0.51 -0.2 5,654,868 - PS417_26170 0.51 -1.3 5,654,967 - PS417_26170 0.62 -1.3 5,655,027 - PS417_26170 0.69 +0.7 5,655,027 - PS417_26170 0.69 -0.2 5,655,184 - PS417_26170 0.88 +1.6 5,655,188 + PS417_26170 0.88 -1.7 5,655,188 + PS417_26170 0.88 -4.3 5,655,189 - PS417_26170 0.88 +0.7 5,655,189 - PS417_26170 0.88 +0.3 5,655,189 - PS417_26170 0.88 +0.9 5,655,293 + +4.4 5,655,486 + PS417_26175 0.30 +2.9 5,655,486 + PS417_26175 0.30 -0.1 5,655,914 + +0.3 5,655,914 + -0.9 5,655,914 + -0.2 5,655,914 + +1.3 5,655,914 + -1.7 5,655,915 - +2.6 5,655,915 - +0.2 5,655,915 - -0.9 5,655,932 - +0.3
Or see this region's nucleotide sequence