Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23530 and PS417_23535 are separated by 221 nucleotides PS417_23535 and PS417_23540 are separated by 101 nucleotides PS417_23540 and PS417_23545 are separated by 15 nucleotides
PS417_23530: PS417_23530 - 1,2-oxophytodienoate reductase, at 5,090,866 to 5,091,969
_23530
PS417_23535: PS417_23535 - glutathione peroxidase, at 5,092,191 to 5,092,673
_23535
PS417_23540: PS417_23540 - CreA, at 5,092,775 to 5,093,239
_23540
PS417_23545: PS417_23545 - gamma-glutamyl kinase, at 5,093,255 to 5,094,373
_23545
Position (kb) 5092
5093 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5091.278 kb on + strand, within PS417_23530 at 5091.278 kb on + strand, within PS417_23530 at 5091.278 kb on + strand, within PS417_23530 at 5091.278 kb on + strand, within PS417_23530 at 5091.279 kb on - strand, within PS417_23530 at 5091.279 kb on - strand, within PS417_23530 at 5091.449 kb on + strand, within PS417_23530 at 5091.603 kb on - strand, within PS417_23530 at 5091.694 kb on + strand, within PS417_23530 at 5091.842 kb on + strand, within PS417_23530 at 5092.038 kb on + strand at 5092.039 kb on - strand at 5092.140 kb on + strand at 5092.176 kb on + strand at 5092.176 kb on + strand at 5092.188 kb on + strand at 5092.188 kb on + strand at 5092.189 kb on - strand at 5092.519 kb on + strand, within PS417_23535 at 5092.519 kb on + strand, within PS417_23535 at 5092.520 kb on - strand, within PS417_23535 at 5092.520 kb on - strand, within PS417_23535 at 5092.520 kb on - strand at 5092.520 kb on - strand, within PS417_23535 at 5092.550 kb on - strand, within PS417_23535 at 5092.722 kb on + strand at 5092.722 kb on + strand at 5092.722 kb on + strand at 5092.745 kb on + strand at 5092.746 kb on - strand at 5092.854 kb on + strand, within PS417_23540 at 5092.854 kb on + strand, within PS417_23540 at 5092.855 kb on - strand, within PS417_23540 at 5092.855 kb on - strand, within PS417_23540 at 5092.857 kb on - strand, within PS417_23540 at 5092.857 kb on - strand, within PS417_23540 at 5093.076 kb on + strand, within PS417_23540 at 5093.076 kb on + strand, within PS417_23540 at 5093.077 kb on - strand, within PS417_23540 at 5093.245 kb on - strand at 5093.245 kb on - strand at 5093.304 kb on + strand at 5093.305 kb on - strand at 5093.305 kb on - strand at 5093.371 kb on - strand, within PS417_23545 at 5093.371 kb on - strand, within PS417_23545 at 5093.418 kb on - strand, within PS417_23545 at 5093.418 kb on - strand, within PS417_23545
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,091,278 + PS417_23530 0.37 -0.5 5,091,278 + PS417_23530 0.37 -0.1 5,091,278 + PS417_23530 0.37 +1.4 5,091,278 + PS417_23530 0.37 -3.3 5,091,279 - PS417_23530 0.37 -2.2 5,091,279 - PS417_23530 0.37 -0.8 5,091,449 + PS417_23530 0.53 +1.9 5,091,603 - PS417_23530 0.67 -1.9 5,091,694 + PS417_23530 0.75 +1.4 5,091,842 + PS417_23530 0.88 +0.5 5,092,038 + +0.9 5,092,039 - -0.2 5,092,140 + -0.3 5,092,176 + -1.2 5,092,176 + +0.1 5,092,188 + +1.8 5,092,188 + +1.9 5,092,189 - +1.5 5,092,519 + PS417_23535 0.68 -0.4 5,092,519 + PS417_23535 0.68 +0.9 5,092,520 - PS417_23535 0.68 +2.6 5,092,520 - PS417_23535 0.68 -1.0 5,092,520 - +0.5 5,092,520 - PS417_23535 0.68 +3.0 5,092,550 - PS417_23535 0.74 -0.1 5,092,722 + +1.6 5,092,722 + -1.3 5,092,722 + +0.2 5,092,745 + +1.4 5,092,746 - +1.3 5,092,854 + PS417_23540 0.17 -0.0 5,092,854 + PS417_23540 0.17 -1.4 5,092,855 - PS417_23540 0.17 +0.3 5,092,855 - PS417_23540 0.17 -0.2 5,092,857 - PS417_23540 0.18 +0.2 5,092,857 - PS417_23540 0.18 -1.0 5,093,076 + PS417_23540 0.65 -1.2 5,093,076 + PS417_23540 0.65 -0.2 5,093,077 - PS417_23540 0.65 -0.5 5,093,245 - -0.5 5,093,245 - +0.3 5,093,304 + -1.0 5,093,305 - -3.9 5,093,305 - -1.3 5,093,371 - PS417_23545 0.10 -1.5 5,093,371 - PS417_23545 0.10 -2.5 5,093,418 - PS417_23545 0.15 -0.8 5,093,418 - PS417_23545 0.15 -2.1
Or see this region's nucleotide sequence