Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23075 and PS417_23080 are separated by 152 nucleotides PS417_23080 and PS417_23085 are separated by 137 nucleotides
PS417_23075: PS417_23075 - inosine-5-monophosphate dehydrogenase, at 5,002,161 to 5,003,630
_23075
PS417_23080: PS417_23080 - sugar ABC transporter ATPase, at 5,003,783 to 5,004,331
_23080
PS417_23085: PS417_23085 - permease, at 5,004,469 to 5,005,236
_23085
Position (kb)
5003
5004
5005 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 5003.674 kb on - strand at 5003.728 kb on - strand at 5003.728 kb on - strand at 5003.773 kb on + strand at 5003.773 kb on + strand at 5003.774 kb on - strand at 5003.774 kb on - strand at 5003.774 kb on - strand at 5003.774 kb on - strand at 5003.827 kb on - strand at 5003.827 kb on - strand at 5004.096 kb on + strand, within PS417_23080 at 5004.096 kb on + strand, within PS417_23080 at 5004.096 kb on + strand, within PS417_23080 at 5004.096 kb on + strand at 5004.097 kb on - strand, within PS417_23080 at 5004.184 kb on - strand, within PS417_23080 at 5004.449 kb on + strand at 5004.482 kb on + strand at 5004.644 kb on + strand, within PS417_23085 at 5004.749 kb on + strand, within PS417_23085 at 5004.889 kb on - strand, within PS417_23085 at 5004.889 kb on - strand, within PS417_23085 at 5004.913 kb on + strand, within PS417_23085 at 5004.913 kb on + strand, within PS417_23085 at 5005.154 kb on + strand, within PS417_23085 at 5005.154 kb on + strand, within PS417_23085 at 5005.155 kb on - strand, within PS417_23085 at 5005.155 kb on - strand, within PS417_23085 at 5005.241 kb on - strand at 5005.249 kb on - strand at 5005.252 kb on - strand at 5005.269 kb on + strand at 5005.270 kb on - strand at 5005.292 kb on + strand at 5005.292 kb on + strand at 5005.292 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,003,674 - -1.1 5,003,728 - -1.0 5,003,728 - +1.5 5,003,773 + +1.0 5,003,773 + +4.1 5,003,774 - -0.3 5,003,774 - -0.9 5,003,774 - +1.8 5,003,774 - -1.4 5,003,827 - +1.9 5,003,827 - -0.5 5,004,096 + PS417_23080 0.57 -0.1 5,004,096 + PS417_23080 0.57 +2.1 5,004,096 + PS417_23080 0.57 -0.9 5,004,096 + +1.2 5,004,097 - PS417_23080 0.57 +1.3 5,004,184 - PS417_23080 0.73 +0.3 5,004,449 + +1.2 5,004,482 + +0.5 5,004,644 + PS417_23085 0.23 -0.3 5,004,749 + PS417_23085 0.36 +1.0 5,004,889 - PS417_23085 0.55 -0.3 5,004,889 - PS417_23085 0.55 -0.4 5,004,913 + PS417_23085 0.58 -1.2 5,004,913 + PS417_23085 0.58 -0.2 5,005,154 + PS417_23085 0.89 -3.0 5,005,154 + PS417_23085 0.89 -1.4 5,005,155 - PS417_23085 0.89 -1.8 5,005,155 - PS417_23085 0.89 -0.2 5,005,241 - +0.2 5,005,249 - -0.7 5,005,252 - -0.1 5,005,269 + -0.2 5,005,270 - +1.0 5,005,292 + -0.4 5,005,292 + +0.1 5,005,292 + -2.3
Or see this region's nucleotide sequence