Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22945 and PS417_22950 are separated by 69 nucleotides PS417_22950 and PS417_22955 are separated by 140 nucleotides PS417_22955 and PS417_22960 overlap by 4 nucleotides PS417_22960 and PS417_22965 are separated by 36 nucleotides
PS417_22945: PS417_22945 - phosphoribosylglycinamide formyltransferase, at 4,971,320 to 4,972,501
_22945
PS417_22950: PS417_22950 - preQ0 transporter, at 4,972,571 to 4,973,038
_22950
PS417_22955: PS417_22955 - Fe-S protein, at 4,973,179 to 4,973,397
_22955
PS417_22960: PS417_22960 - hypothetical protein, at 4,973,394 to 4,973,918
_22960
PS417_22965: PS417_22965 - DNA mismatch repair protein MutT, at 4,973,955 to 4,974,557
_22965
Position (kb) 4973
4974 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 4972.703 kb on - strand, within PS417_22950 at 4972.854 kb on + strand, within PS417_22950 at 4972.855 kb on - strand, within PS417_22950 at 4973.072 kb on + strand at 4973.073 kb on - strand at 4973.090 kb on - strand at 4973.208 kb on + strand, within PS417_22955 at 4973.305 kb on + strand, within PS417_22955 at 4973.331 kb on + strand, within PS417_22955 at 4973.331 kb on + strand, within PS417_22955 at 4973.331 kb on + strand at 4973.331 kb on + strand, within PS417_22955 at 4973.332 kb on - strand, within PS417_22955 at 4973.355 kb on + strand, within PS417_22955 at 4973.356 kb on - strand, within PS417_22955 at 4973.438 kb on + strand at 4973.438 kb on + strand at 4973.438 kb on + strand at 4973.446 kb on + strand at 4973.446 kb on + strand at 4973.447 kb on - strand, within PS417_22960 at 4973.447 kb on - strand, within PS417_22960 at 4973.641 kb on + strand, within PS417_22960 at 4973.642 kb on - strand, within PS417_22960 at 4973.912 kb on - strand at 4973.956 kb on + strand at 4973.956 kb on + strand at 4973.956 kb on + strand at 4973.956 kb on + strand at 4973.957 kb on - strand at 4973.957 kb on - strand at 4974.030 kb on + strand, within PS417_22965 at 4974.091 kb on + strand, within PS417_22965 at 4974.091 kb on + strand, within PS417_22965 at 4974.091 kb on + strand, within PS417_22965 at 4974.092 kb on - strand, within PS417_22965 at 4974.098 kb on + strand at 4974.099 kb on - strand, within PS417_22965 at 4974.099 kb on - strand, within PS417_22965 at 4974.099 kb on - strand, within PS417_22965 at 4974.099 kb on - strand, within PS417_22965 at 4974.203 kb on - strand, within PS417_22965 at 4974.212 kb on - strand, within PS417_22965 at 4974.312 kb on + strand, within PS417_22965 at 4974.313 kb on - strand, within PS417_22965
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,972,703 - PS417_22950 0.28 -0.3 4,972,854 + PS417_22950 0.60 -1.2 4,972,855 - PS417_22950 0.61 +0.2 4,973,072 + +0.1 4,973,073 - +0.3 4,973,090 - +0.4 4,973,208 + PS417_22955 0.13 +0.4 4,973,305 + PS417_22955 0.58 +1.0 4,973,331 + PS417_22955 0.69 +0.7 4,973,331 + PS417_22955 0.69 +0.8 4,973,331 + +0.4 4,973,331 + PS417_22955 0.69 +1.1 4,973,332 - PS417_22955 0.70 +2.4 4,973,355 + PS417_22955 0.80 +1.2 4,973,356 - PS417_22955 0.81 -0.8 4,973,438 + -1.3 4,973,438 + +0.3 4,973,438 + -0.7 4,973,446 + -1.6 4,973,446 + -5.2 4,973,447 - PS417_22960 0.10 +0.2 4,973,447 - PS417_22960 0.10 -1.5 4,973,641 + PS417_22960 0.47 -0.4 4,973,642 - PS417_22960 0.47 +0.4 4,973,912 - -0.3 4,973,956 + +1.6 4,973,956 + -0.3 4,973,956 + -0.7 4,973,956 + -1.3 4,973,957 - +1.1 4,973,957 - +1.4 4,974,030 + PS417_22965 0.12 +0.6 4,974,091 + PS417_22965 0.23 +0.3 4,974,091 + PS417_22965 0.23 +1.0 4,974,091 + PS417_22965 0.23 +0.2 4,974,092 - PS417_22965 0.23 -0.2 4,974,098 + +0.9 4,974,099 - PS417_22965 0.24 +0.5 4,974,099 - PS417_22965 0.24 +0.5 4,974,099 - PS417_22965 0.24 -0.4 4,974,099 - PS417_22965 0.24 -0.1 4,974,203 - PS417_22965 0.41 +1.8 4,974,212 - PS417_22965 0.43 +0.3 4,974,312 + PS417_22965 0.59 +0.3 4,974,313 - PS417_22965 0.59 +1.7
Or see this region's nucleotide sequence