Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21845 and PS417_21850 overlap by 4 nucleotides PS417_21850 and PS417_21855 are separated by 80 nucleotides PS417_21855 and PS417_21860 overlap by 4 nucleotides PS417_21860 and PS417_21865 overlap by 4 nucleotides PS417_21865 and PS417_21870 are separated by 232 nucleotides
PS417_21845: PS417_21845 - membrane protein, at 4,743,935 to 4,744,453
_21845
PS417_21850: PS417_21850 - LysR family transcriptional regulator, at 4,744,450 to 4,745,328
_21850
PS417_21855: PS417_21855 - hypothetical protein, at 4,745,409 to 4,746,110
_21855
PS417_21860: PS417_21860 - hypothetical protein, at 4,746,107 to 4,746,430
_21860
PS417_21865: PS417_21865 - hypothetical protein, at 4,746,427 to 4,746,750
_21865
PS417_21870: PS417_21870 - glycerophosphodiester phosphodiesterase, at 4,746,983 to 4,748,110
_21870
Position (kb)
4745
4746
4747 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4744.451 kb on + strand at 4744.818 kb on - strand, within PS417_21850 at 4745.306 kb on + strand at 4745.367 kb on + strand at 4745.367 kb on + strand at 4745.367 kb on + strand at 4745.396 kb on + strand at 4745.403 kb on + strand at 4745.403 kb on + strand at 4745.403 kb on + strand at 4745.404 kb on - strand at 4745.404 kb on - strand at 4745.404 kb on - strand at 4745.448 kb on + strand at 4745.530 kb on + strand, within PS417_21855 at 4745.608 kb on - strand, within PS417_21855 at 4745.860 kb on - strand, within PS417_21855 at 4745.978 kb on - strand at 4746.134 kb on + strand at 4746.134 kb on + strand at 4746.135 kb on - strand at 4746.135 kb on - strand at 4746.138 kb on - strand at 4746.138 kb on - strand at 4746.148 kb on - strand, within PS417_21860 at 4746.480 kb on + strand at 4746.480 kb on + strand, within PS417_21865 at 4746.481 kb on - strand, within PS417_21865 at 4746.481 kb on - strand, within PS417_21865 at 4746.482 kb on + strand, within PS417_21865 at 4746.482 kb on + strand, within PS417_21865 at 4746.668 kb on + strand, within PS417_21865 at 4746.669 kb on - strand, within PS417_21865 at 4746.753 kb on + strand at 4746.959 kb on + strand at 4746.960 kb on - strand at 4746.982 kb on + strand at 4746.983 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,744,451 + -3.5 4,744,818 - PS417_21850 0.42 -1.1 4,745,306 + -1.0 4,745,367 + +0.7 4,745,367 + -1.1 4,745,367 + +0.7 4,745,396 + -2.3 4,745,403 + -1.6 4,745,403 + +1.4 4,745,403 + +0.2 4,745,404 - +0.7 4,745,404 - -0.8 4,745,404 - +0.5 4,745,448 + -0.6 4,745,530 + PS417_21855 0.17 +0.4 4,745,608 - PS417_21855 0.28 +1.7 4,745,860 - PS417_21855 0.64 -3.1 4,745,978 - +0.1 4,746,134 + -1.2 4,746,134 + -1.2 4,746,135 - -0.5 4,746,135 - -0.0 4,746,138 - +0.4 4,746,138 - -0.4 4,746,148 - PS417_21860 0.13 -1.3 4,746,480 + -0.2 4,746,480 + PS417_21865 0.16 -1.1 4,746,481 - PS417_21865 0.17 -2.4 4,746,481 - PS417_21865 0.17 +0.3 4,746,482 + PS417_21865 0.17 +0.0 4,746,482 + PS417_21865 0.17 +2.2 4,746,668 + PS417_21865 0.74 -1.2 4,746,669 - PS417_21865 0.75 -2.1 4,746,753 + +1.3 4,746,959 + -0.5 4,746,960 - +0.2 4,746,982 + +1.2 4,746,983 - +0.6
Or see this region's nucleotide sequence