Strain Fitness in Pseudomonas simiae WCS417 around PS417_21710

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21705 and PS417_21710 are separated by 245 nucleotidesPS417_21710 and PS417_21715 are separated by 309 nucleotides PS417_21705: PS417_21705 - arginine N-succinyltransferase, at 4,708,253 to 4,709,272 _21705 PS417_21710: PS417_21710 - Succinylornithine transaminase (EC 2.6.1.81) (from data), at 4,709,518 to 4,710,738 _21710 PS417_21715: PS417_21715 - hypothetical protein, at 4,711,048 to 4,716,966 _21715 Position (kb) 4709 4710 4711Strain fitness (log2 ratio) -3 -2 -1 0 1at 4708.524 kb on + strand, within PS417_21705at 4708.525 kb on - strand, within PS417_21705at 4708.633 kb on - strand, within PS417_21705at 4708.633 kb on - strand, within PS417_21705at 4708.633 kb on - strand, within PS417_21705at 4708.633 kb on - strand, within PS417_21705at 4708.633 kb on - strand, within PS417_21705at 4708.708 kb on - strand, within PS417_21705at 4709.010 kb on + strand, within PS417_21705at 4709.011 kb on - strand, within PS417_21705at 4710.220 kb on - strand, within PS417_21710at 4710.222 kb on - strand, within PS417_21710at 4710.270 kb on - strand, within PS417_21710at 4710.270 kb on - strand, within PS417_21710at 4710.270 kb on - strand, within PS417_21710at 4710.632 kb on - strandat 4710.678 kb on - strandat 4710.678 kb on - strandat 4710.681 kb on + strandat 4710.682 kb on - strandat 4710.794 kb on + strandat 4710.794 kb on + strandat 4710.795 kb on - strandat 4710.840 kb on - strandat 4710.840 kb on - strandat 4710.870 kb on - strandat 4710.958 kb on + strandat 4710.958 kb on + strandat 4710.974 kb on - strandat 4710.977 kb on + strandat 4710.977 kb on + strandat 4710.977 kb on + strandat 4710.977 kb on + strandat 4710.978 kb on - strandat 4710.981 kb on + strandat 4710.982 kb on - strandat 4710.982 kb on - strandat 4711.014 kb on - strandat 4711.014 kb on - strandat 4711.042 kb on - strandat 4711.381 kb on + strandat 4711.382 kb on - strandat 4711.382 kb on - strandat 4711.393 kb on + strandat 4711.393 kb on + strandat 4711.393 kb on + strandat 4711.395 kb on + strandat 4711.395 kb on + strandat 4711.395 kb on + strandat 4711.396 kb on - strandat 4711.634 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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4,708,524 + PS417_21705 0.27 -2.7
4,708,525 - PS417_21705 0.27 -0.4
4,708,633 - PS417_21705 0.37 -1.8
4,708,633 - PS417_21705 0.37 -3.5
4,708,633 - PS417_21705 0.37 -0.3
4,708,633 - PS417_21705 0.37 -1.2
4,708,633 - PS417_21705 0.37 +0.1
4,708,708 - PS417_21705 0.45 +0.2
4,709,010 + PS417_21705 0.74 -2.6
4,709,011 - PS417_21705 0.74 -2.8
4,710,220 - PS417_21710 0.57 -1.6
4,710,222 - PS417_21710 0.58 -2.7
4,710,270 - PS417_21710 0.62 -3.4
4,710,270 - PS417_21710 0.62 -0.8
4,710,270 - PS417_21710 0.62 -0.7
4,710,632 - -2.5
4,710,678 - -1.9
4,710,678 - -1.3
4,710,681 + -3.2
4,710,682 - -2.8
4,710,794 + -2.5
4,710,794 + -2.4
4,710,795 - -0.7
4,710,840 - -0.6
4,710,840 - +0.8
4,710,870 - -2.3
4,710,958 + -1.5
4,710,958 + -1.3
4,710,974 - -0.8
4,710,977 + -1.0
4,710,977 + -0.9
4,710,977 + -0.8
4,710,977 + -0.8
4,710,978 - -0.1
4,710,981 + -2.2
4,710,982 - +1.5
4,710,982 - +1.0
4,711,014 - -1.2
4,711,014 - -1.2
4,711,042 - +0.5
4,711,381 + -1.0
4,711,382 - +1.6
4,711,382 - +0.4
4,711,393 + -1.5
4,711,393 + +0.7
4,711,393 + -1.7
4,711,395 + -1.5
4,711,395 + -0.1
4,711,395 + -0.4
4,711,396 - +1.2
4,711,634 - -1.3

Or see this region's nucleotide sequence