Strain Fitness in Pseudomonas simiae WCS417 around PS417_02105

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02095 and PS417_02100 overlap by 4 nucleotidesPS417_02100 and PS417_02105 overlap by 4 nucleotidesPS417_02105 and PS417_02110 are separated by 9 nucleotidesPS417_02110 and PS417_02115 overlap by 23 nucleotides PS417_02095: PS417_02095 - AMP-binding protein, at 469,059 to 470,729 _02095 PS417_02100: PS417_02100 - membrane protein, at 470,726 to 471,271 _02100 PS417_02105: PS417_02105 - acyl carrier protein, at 471,268 to 471,522 _02105 PS417_02110: PS417_02110 - acyl carrier protein, at 471,532 to 471,801 _02110 PS417_02115: PS417_02115 - acyltransferase, at 471,779 to 472,591 _02115 Position (kb) 471 472Strain fitness (log2 ratio) -2 -1 0 1 2at 470.575 kb on + strandat 470.811 kb on + strand, within PS417_02100at 470.811 kb on + strand, within PS417_02100at 470.913 kb on + strand, within PS417_02100at 470.913 kb on + strand, within PS417_02100at 470.914 kb on - strand, within PS417_02100at 470.983 kb on - strand, within PS417_02100at 471.210 kb on + strand, within PS417_02100at 471.210 kb on + strand, within PS417_02100at 471.211 kb on - strand, within PS417_02100at 471.211 kb on - strand, within PS417_02100at 471.294 kb on - strand, within PS417_02105at 471.375 kb on + strand, within PS417_02105at 471.375 kb on + strand, within PS417_02105at 471.504 kb on + strandat 471.769 kb on + strand, within PS417_02110at 471.825 kb on + strandat 471.899 kb on + strand, within PS417_02115at 471.899 kb on + strand, within PS417_02115at 471.899 kb on + strand, within PS417_02115at 471.900 kb on - strand, within PS417_02115at 471.900 kb on - strand, within PS417_02115at 471.901 kb on + strand, within PS417_02115at 472.172 kb on - strand, within PS417_02115at 472.174 kb on - strand, within PS417_02115at 472.409 kb on - strand, within PS417_02115at 472.409 kb on - strand, within PS417_02115

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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470,575 + -0.3
470,811 + PS417_02100 0.16 -1.5
470,811 + PS417_02100 0.16 +0.0
470,913 + PS417_02100 0.34 +0.1
470,913 + PS417_02100 0.34 +0.4
470,914 - PS417_02100 0.34 +0.9
470,983 - PS417_02100 0.47 -0.6
471,210 + PS417_02100 0.89 +0.7
471,210 + PS417_02100 0.89 -0.2
471,211 - PS417_02100 0.89 -2.5
471,211 - PS417_02100 0.89 +1.4
471,294 - PS417_02105 0.10 +2.0
471,375 + PS417_02105 0.42 -0.3
471,375 + PS417_02105 0.42 +0.6
471,504 + +1.8
471,769 + PS417_02110 0.88 +0.9
471,825 + -2.3
471,899 + PS417_02115 0.15 +0.0
471,899 + PS417_02115 0.15 +2.5
471,899 + PS417_02115 0.15 +1.3
471,900 - PS417_02115 0.15 -0.9
471,900 - PS417_02115 0.15 -1.1
471,901 + PS417_02115 0.15 +0.7
472,172 - PS417_02115 0.48 -0.6
472,174 - PS417_02115 0.49 +0.0
472,409 - PS417_02115 0.77 -0.1
472,409 - PS417_02115 0.77 -1.3

Or see this region's nucleotide sequence