Strain Fitness in Pseudomonas simiae WCS417 around PS417_21170

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21165 and PS417_21170 are separated by 54 nucleotidesPS417_21170 and PS417_21175 are separated by 119 nucleotides PS417_21165: PS417_21165 - LysR family transcriptional regulator, at 4,604,341 to 4,605,225 _21165 PS417_21170: PS417_21170 - membrane protein, at 4,605,280 to 4,605,858 _21170 PS417_21175: PS417_21175 - hypothetical protein, at 4,605,978 to 4,606,610 _21175 Position (kb) 4605 4606Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4604.299 kb on - strandat 4604.299 kb on - strandat 4604.331 kb on - strandat 4604.434 kb on - strand, within PS417_21165at 4604.660 kb on + strand, within PS417_21165at 4604.860 kb on + strand, within PS417_21165at 4604.868 kb on - strand, within PS417_21165at 4604.868 kb on - strand, within PS417_21165at 4604.868 kb on - strand, within PS417_21165at 4605.211 kb on + strandat 4605.212 kb on - strandat 4605.215 kb on + strandat 4605.216 kb on - strandat 4605.424 kb on + strand, within PS417_21170at 4605.511 kb on + strand, within PS417_21170at 4605.512 kb on - strand, within PS417_21170at 4605.512 kb on - strand, within PS417_21170at 4605.514 kb on + strand, within PS417_21170at 4605.586 kb on + strand, within PS417_21170at 4605.587 kb on - strand, within PS417_21170at 4605.587 kb on - strand, within PS417_21170at 4605.607 kb on + strand, within PS417_21170at 4605.762 kb on + strand, within PS417_21170at 4605.763 kb on - strand, within PS417_21170at 4605.909 kb on + strandat 4605.909 kb on + strandat 4605.910 kb on - strandat 4605.913 kb on + strandat 4605.913 kb on + strandat 4605.913 kb on + strandat 4605.913 kb on + strandat 4605.913 kb on + strandat 4605.913 kb on + strandat 4605.913 kb on + strandat 4605.914 kb on - strandat 4605.914 kb on - strandat 4605.914 kb on - strandat 4605.914 kb on - strandat 4605.936 kb on + strandat 4605.937 kb on - strandat 4605.973 kb on + strandat 4605.973 kb on + strandat 4606.223 kb on - strand, within PS417_21175at 4606.231 kb on + strand, within PS417_21175at 4606.241 kb on - strand, within PS417_21175at 4606.248 kb on - strand, within PS417_21175at 4606.323 kb on + strand, within PS417_21175at 4606.323 kb on + strand, within PS417_21175at 4606.324 kb on - strand, within PS417_21175at 4606.440 kb on + strand, within PS417_21175at 4606.440 kb on + strand, within PS417_21175at 4606.440 kb on + strand, within PS417_21175at 4606.443 kb on + strand, within PS417_21175at 4606.444 kb on - strand, within PS417_21175at 4606.444 kb on - strand, within PS417_21175at 4606.444 kb on - strand, within PS417_21175at 4606.448 kb on + strand, within PS417_21175at 4606.501 kb on + strand, within PS417_21175at 4606.501 kb on + strand, within PS417_21175at 4606.501 kb on + strand, within PS417_21175at 4606.501 kb on + strand, within PS417_21175at 4606.502 kb on - strand, within PS417_21175at 4606.502 kb on - strand, within PS417_21175at 4606.609 kb on - strandat 4606.638 kb on - strandat 4606.648 kb on + strandat 4606.648 kb on + strandat 4606.648 kb on + strandat 4606.648 kb on + strandat 4606.648 kb on + strandat 4606.648 kb on + strandat 4606.648 kb on + strandat 4606.649 kb on - strandat 4606.649 kb on - strandat 4606.649 kb on - strandat 4606.649 kb on - strandat 4606.649 kb on - strandat 4606.708 kb on + strandat 4606.750 kb on - strandat 4606.751 kb on + strandat 4606.751 kb on + strandat 4606.797 kb on - strandat 4606.848 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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4,604,299 - +0.9
4,604,299 - +0.2
4,604,331 - -1.4
4,604,434 - PS417_21165 0.11 +0.6
4,604,660 + PS417_21165 0.36 +0.1
4,604,860 + PS417_21165 0.59 +0.2
4,604,868 - PS417_21165 0.60 +0.3
4,604,868 - PS417_21165 0.60 +1.7
4,604,868 - PS417_21165 0.60 -0.0
4,605,211 + -2.0
4,605,212 - +0.3
4,605,215 + +0.2
4,605,216 - +0.1
4,605,424 + PS417_21170 0.25 -1.9
4,605,511 + PS417_21170 0.40 +2.1
4,605,512 - PS417_21170 0.40 +2.9
4,605,512 - PS417_21170 0.40 +0.9
4,605,514 + PS417_21170 0.40 +0.4
4,605,586 + PS417_21170 0.53 +0.2
4,605,587 - PS417_21170 0.53 +0.9
4,605,587 - PS417_21170 0.53 -2.5
4,605,607 + PS417_21170 0.56 +0.7
4,605,762 + PS417_21170 0.83 -2.2
4,605,763 - PS417_21170 0.83 -0.1
4,605,909 + +0.3
4,605,909 + +0.6
4,605,910 - -2.2
4,605,913 + -2.7
4,605,913 + -0.1
4,605,913 + +1.0
4,605,913 + +0.3
4,605,913 + -0.1
4,605,913 + +1.2
4,605,913 + +0.9
4,605,914 - -0.6
4,605,914 - -0.1
4,605,914 - -0.3
4,605,914 - +0.1
4,605,936 + -0.7
4,605,937 - -0.1
4,605,973 + +0.2
4,605,973 + +1.4
4,606,223 - PS417_21175 0.39 -0.9
4,606,231 + PS417_21175 0.40 +0.0
4,606,241 - PS417_21175 0.42 +0.4
4,606,248 - PS417_21175 0.43 -0.1
4,606,323 + PS417_21175 0.55 +0.9
4,606,323 + PS417_21175 0.55 -1.6
4,606,324 - PS417_21175 0.55 -3.1
4,606,440 + PS417_21175 0.73 -1.4
4,606,440 + PS417_21175 0.73 +0.3
4,606,440 + PS417_21175 0.73 -1.9
4,606,443 + PS417_21175 0.73 +0.7
4,606,444 - PS417_21175 0.74 +1.9
4,606,444 - PS417_21175 0.74 +0.6
4,606,444 - PS417_21175 0.74 +2.5
4,606,448 + PS417_21175 0.74 -0.5
4,606,501 + PS417_21175 0.83 -1.0
4,606,501 + PS417_21175 0.83 -1.0
4,606,501 + PS417_21175 0.83 +0.3
4,606,501 + PS417_21175 0.83 -0.1
4,606,502 - PS417_21175 0.83 -0.5
4,606,502 - PS417_21175 0.83 -0.1
4,606,609 - +0.6
4,606,638 - +0.2
4,606,648 + -1.4
4,606,648 + -1.5
4,606,648 + +0.2
4,606,648 + +0.2
4,606,648 + -0.9
4,606,648 + +0.1
4,606,648 + -1.9
4,606,649 - +0.3
4,606,649 - +1.2
4,606,649 - +1.0
4,606,649 - -1.3
4,606,649 - -0.0
4,606,708 + +0.1
4,606,750 - -0.6
4,606,751 + +1.4
4,606,751 + +0.8
4,606,797 - -4.1
4,606,848 + +1.8

Or see this region's nucleotide sequence