Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20250 and PS417_20255 are separated by 50 nucleotides PS417_20255 and PS417_20260 are separated by 10 nucleotides PS417_20260 and PS417_20265 are separated by 127 nucleotides PS417_20265 and PS417_20270 are separated by 153 nucleotides PS417_20270 and PS417_20275 are separated by 50 nucleotides
PS417_20250: PS417_20250 - copper resistance protein CopC, at 4,397,994 to 4,398,380
_20250
PS417_20255: PS417_20255 - copper resistance protein CopB, at 4,398,431 to 4,399,246
_20255
PS417_20260: PS417_20260 - copper oxidase, at 4,399,257 to 4,400,963
_20260
PS417_20265: PS417_20265 - transcriptional regulator, at 4,401,091 to 4,401,480
_20265
PS417_20270: PS417_20270 - hypothetical protein, at 4,401,634 to 4,401,909
_20270
PS417_20275: PS417_20275 - RNA helicase, at 4,401,960 to 4,403,306
_20275
Position (kb) 4399
4400
4401 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4398.369 kb on - strand at 4398.369 kb on - strand at 4398.498 kb on + strand at 4398.544 kb on - strand, within PS417_20255 at 4398.564 kb on - strand, within PS417_20255 at 4398.746 kb on + strand, within PS417_20255 at 4398.771 kb on + strand, within PS417_20255 at 4398.948 kb on - strand, within PS417_20255 at 4399.092 kb on + strand, within PS417_20255 at 4399.092 kb on + strand, within PS417_20255 at 4399.093 kb on - strand, within PS417_20255 at 4399.093 kb on - strand, within PS417_20255 at 4399.303 kb on + strand at 4399.304 kb on - strand at 4399.578 kb on - strand, within PS417_20260 at 4399.657 kb on + strand, within PS417_20260 at 4399.945 kb on + strand, within PS417_20260 at 4399.981 kb on + strand, within PS417_20260 at 4400.007 kb on + strand, within PS417_20260 at 4400.007 kb on + strand, within PS417_20260 at 4400.007 kb on + strand, within PS417_20260 at 4400.008 kb on - strand, within PS417_20260 at 4400.008 kb on - strand, within PS417_20260 at 4400.122 kb on + strand, within PS417_20260 at 4400.213 kb on + strand, within PS417_20260 at 4400.221 kb on + strand, within PS417_20260 at 4400.221 kb on + strand, within PS417_20260 at 4400.221 kb on + strand, within PS417_20260 at 4400.227 kb on + strand, within PS417_20260 at 4400.227 kb on + strand, within PS417_20260 at 4400.227 kb on + strand, within PS417_20260 at 4400.228 kb on - strand, within PS417_20260 at 4400.228 kb on - strand, within PS417_20260 at 4400.368 kb on + strand, within PS417_20260 at 4400.368 kb on + strand, within PS417_20260 at 4400.368 kb on + strand, within PS417_20260 at 4400.368 kb on + strand, within PS417_20260 at 4400.368 kb on + strand, within PS417_20260 at 4400.368 kb on + strand, within PS417_20260 at 4400.369 kb on - strand, within PS417_20260 at 4400.446 kb on + strand, within PS417_20260 at 4400.447 kb on - strand, within PS417_20260 at 4400.447 kb on - strand at 4400.465 kb on - strand, within PS417_20260 at 4400.465 kb on - strand, within PS417_20260 at 4400.548 kb on + strand, within PS417_20260 at 4400.940 kb on - strand at 4400.999 kb on + strand at 4401.315 kb on - strand, within PS417_20265 at 4401.398 kb on + strand, within PS417_20265 at 4401.398 kb on + strand, within PS417_20265 at 4401.399 kb on - strand, within PS417_20265 at 4401.399 kb on - strand, within PS417_20265 at 4401.470 kb on + strand at 4401.471 kb on - strand at 4401.471 kb on - strand at 4401.510 kb on + strand at 4401.915 kb on + strand at 4401.961 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,398,369 - -3.3 4,398,369 - -0.2 4,398,498 + +0.6 4,398,544 - PS417_20255 0.14 +0.9 4,398,564 - PS417_20255 0.16 +0.1 4,398,746 + PS417_20255 0.39 -1.7 4,398,771 + PS417_20255 0.42 +1.7 4,398,948 - PS417_20255 0.63 +0.0 4,399,092 + PS417_20255 0.81 +0.7 4,399,092 + PS417_20255 0.81 -0.1 4,399,093 - PS417_20255 0.81 +2.0 4,399,093 - PS417_20255 0.81 +0.8 4,399,303 + +0.6 4,399,304 - +0.9 4,399,578 - PS417_20260 0.19 +0.0 4,399,657 + PS417_20260 0.23 -0.3 4,399,945 + PS417_20260 0.40 -1.6 4,399,981 + PS417_20260 0.42 +0.8 4,400,007 + PS417_20260 0.44 +1.7 4,400,007 + PS417_20260 0.44 +0.5 4,400,007 + PS417_20260 0.44 -1.3 4,400,008 - PS417_20260 0.44 +0.3 4,400,008 - PS417_20260 0.44 +0.3 4,400,122 + PS417_20260 0.51 -2.6 4,400,213 + PS417_20260 0.56 +0.8 4,400,221 + PS417_20260 0.56 +0.0 4,400,221 + PS417_20260 0.56 +0.3 4,400,221 + PS417_20260 0.56 +0.1 4,400,227 + PS417_20260 0.57 -0.9 4,400,227 + PS417_20260 0.57 +0.5 4,400,227 + PS417_20260 0.57 +0.1 4,400,228 - PS417_20260 0.57 -1.5 4,400,228 - PS417_20260 0.57 +1.7 4,400,368 + PS417_20260 0.65 +0.1 4,400,368 + PS417_20260 0.65 -0.0 4,400,368 + PS417_20260 0.65 +1.9 4,400,368 + PS417_20260 0.65 +0.7 4,400,368 + PS417_20260 0.65 -0.1 4,400,368 + PS417_20260 0.65 +0.2 4,400,369 - PS417_20260 0.65 +1.1 4,400,446 + PS417_20260 0.70 +0.4 4,400,447 - PS417_20260 0.70 +0.3 4,400,447 - -0.5 4,400,465 - PS417_20260 0.71 +1.4 4,400,465 - PS417_20260 0.71 -0.0 4,400,548 + PS417_20260 0.76 +0.5 4,400,940 - -3.7 4,400,999 + -0.0 4,401,315 - PS417_20265 0.57 -0.3 4,401,398 + PS417_20265 0.79 +1.2 4,401,398 + PS417_20265 0.79 +0.1 4,401,399 - PS417_20265 0.79 +0.1 4,401,399 - PS417_20265 0.79 +2.0 4,401,470 + +0.1 4,401,471 - +0.6 4,401,471 - -1.3 4,401,510 + +0.2 4,401,915 + +2.4 4,401,961 + +0.4
Or see this region's nucleotide sequence