Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20150 and PS417_20155 are separated by 119 nucleotides PS417_20155 and PS417_20160 overlap by 1 nucleotides
PS417_20150: PS417_20150 - (p)ppGpp synthetase, at 4,372,461 to 4,374,704
_20150
PS417_20155: PS417_20155 - 23S rRNA methyltransferase, at 4,374,824 to 4,376,176
_20155
PS417_20160: PS417_20160 - cysteine synthase, at 4,376,176 to 4,377,078
_20160
Position (kb) 4374
4375
4376
4377 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 4374.712 kb on - strand at 4374.762 kb on + strand at 4374.762 kb on + strand at 4374.762 kb on + strand at 4374.763 kb on - strand at 4374.763 kb on - strand at 4374.825 kb on + strand at 4374.839 kb on + strand at 4374.966 kb on + strand, within PS417_20155 at 4374.966 kb on + strand, within PS417_20155 at 4374.966 kb on + strand, within PS417_20155 at 4374.966 kb on + strand, within PS417_20155 at 4374.967 kb on - strand, within PS417_20155 at 4374.967 kb on - strand, within PS417_20155 at 4374.967 kb on - strand, within PS417_20155 at 4374.967 kb on - strand, within PS417_20155 at 4374.967 kb on - strand, within PS417_20155 at 4375.120 kb on + strand, within PS417_20155 at 4375.505 kb on + strand, within PS417_20155 at 4375.505 kb on + strand, within PS417_20155 at 4375.506 kb on - strand, within PS417_20155 at 4375.506 kb on - strand, within PS417_20155 at 4375.508 kb on - strand, within PS417_20155 at 4375.508 kb on - strand, within PS417_20155 at 4375.534 kb on + strand, within PS417_20155 at 4375.534 kb on + strand, within PS417_20155 at 4375.535 kb on - strand, within PS417_20155 at 4375.535 kb on - strand, within PS417_20155 at 4375.922 kb on + strand, within PS417_20155 at 4376.280 kb on + strand, within PS417_20160 at 4376.406 kb on - strand, within PS417_20160 at 4376.420 kb on + strand, within PS417_20160 at 4376.420 kb on + strand, within PS417_20160 at 4376.421 kb on - strand, within PS417_20160 at 4376.615 kb on + strand, within PS417_20160 at 4376.616 kb on - strand, within PS417_20160 at 4376.814 kb on - strand, within PS417_20160 at 4377.060 kb on + strand at 4377.061 kb on - strand at 4377.084 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,374,712 - -1.0 4,374,762 + -0.7 4,374,762 + +0.0 4,374,762 + -1.0 4,374,763 - +0.5 4,374,763 - -0.5 4,374,825 + -2.6 4,374,839 + +0.3 4,374,966 + PS417_20155 0.10 -0.5 4,374,966 + PS417_20155 0.10 +2.1 4,374,966 + PS417_20155 0.10 -0.1 4,374,966 + PS417_20155 0.10 -0.7 4,374,967 - PS417_20155 0.11 -1.3 4,374,967 - PS417_20155 0.11 -0.1 4,374,967 - PS417_20155 0.11 -1.3 4,374,967 - PS417_20155 0.11 +0.8 4,374,967 - PS417_20155 0.11 -2.1 4,375,120 + PS417_20155 0.22 +2.2 4,375,505 + PS417_20155 0.50 -1.7 4,375,505 + PS417_20155 0.50 +0.3 4,375,506 - PS417_20155 0.50 -1.8 4,375,506 - PS417_20155 0.50 +0.6 4,375,508 - PS417_20155 0.51 -1.0 4,375,508 - PS417_20155 0.51 -0.8 4,375,534 + PS417_20155 0.52 +0.6 4,375,534 + PS417_20155 0.52 -0.6 4,375,535 - PS417_20155 0.53 -2.3 4,375,535 - PS417_20155 0.53 -0.5 4,375,922 + PS417_20155 0.81 +1.5 4,376,280 + PS417_20160 0.12 -1.0 4,376,406 - PS417_20160 0.25 -1.8 4,376,420 + PS417_20160 0.27 -3.2 4,376,420 + PS417_20160 0.27 -2.0 4,376,421 - PS417_20160 0.27 -3.7 4,376,615 + PS417_20160 0.49 -4.0 4,376,616 - PS417_20160 0.49 -4.6 4,376,814 - PS417_20160 0.71 -3.0 4,377,060 + -2.7 4,377,061 - -5.1 4,377,084 - +0.7
Or see this region's nucleotide sequence