Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19675 and PS417_19680 are separated by 48 nucleotides PS417_19680 and PS417_19685 are separated by 11 nucleotides PS417_19685 and PS417_19690 are separated by 18 nucleotides
PS417_19675: PS417_19675 - chemotaxis protein CheY, at 4,275,472 to 4,276,599
_19675
PS417_19680: PS417_19680 - chemotaxis protein CheA, at 4,276,648 to 4,278,855
_19680
PS417_19685: PS417_19685 - protein phosphatase, at 4,278,867 to 4,279,655
_19685
PS417_19690: PS417_19690 - histidine kinase, at 4,279,674 to 4,280,060
_19690
Position (kb) 4276
4277
4278
4279 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 4275.734 kb on + strand, within PS417_19675 at 4275.735 kb on - strand, within PS417_19675 at 4276.008 kb on + strand, within PS417_19675 at 4276.027 kb on - strand, within PS417_19675 at 4276.027 kb on - strand, within PS417_19675 at 4276.029 kb on - strand, within PS417_19675 at 4276.029 kb on - strand, within PS417_19675 at 4276.194 kb on + strand, within PS417_19675 at 4276.434 kb on - strand, within PS417_19675 at 4276.599 kb on + strand at 4277.243 kb on + strand, within PS417_19680 at 4277.244 kb on - strand, within PS417_19680 at 4277.244 kb on - strand, within PS417_19680 at 4278.704 kb on - strand at 4278.704 kb on - strand at 4278.812 kb on - strand at 4278.812 kb on - strand at 4278.869 kb on - strand at 4278.877 kb on - strand at 4278.877 kb on - strand at 4279.384 kb on + strand, within PS417_19685 at 4279.384 kb on + strand, within PS417_19685 at 4279.385 kb on - strand, within PS417_19685 at 4279.385 kb on - strand, within PS417_19685 at 4279.385 kb on - strand, within PS417_19685 at 4279.385 kb on - strand, within PS417_19685 at 4279.385 kb on - strand, within PS417_19685 at 4279.385 kb on - strand, within PS417_19685 at 4279.647 kb on - strand at 4279.656 kb on - strand at 4279.747 kb on + strand, within PS417_19690 at 4279.848 kb on + strand, within PS417_19690 at 4279.848 kb on + strand, within PS417_19690 at 4279.848 kb on + strand, within PS417_19690 at 4279.848 kb on + strand, within PS417_19690 at 4279.849 kb on - strand, within PS417_19690
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,275,734 + PS417_19675 0.23 -2.4 4,275,735 - PS417_19675 0.23 -5.1 4,276,008 + PS417_19675 0.48 -5.9 4,276,027 - PS417_19675 0.49 -2.2 4,276,027 - PS417_19675 0.49 -2.6 4,276,029 - PS417_19675 0.49 -0.6 4,276,029 - PS417_19675 0.49 -3.9 4,276,194 + PS417_19675 0.64 -2.8 4,276,434 - PS417_19675 0.85 -4.6 4,276,599 + -2.2 4,277,243 + PS417_19680 0.27 -1.9 4,277,244 - PS417_19680 0.27 -0.2 4,277,244 - PS417_19680 0.27 -1.4 4,278,704 - -4.7 4,278,704 - -2.6 4,278,812 - -4.3 4,278,812 - -0.6 4,278,869 - -2.1 4,278,877 - -3.2 4,278,877 - -3.4 4,279,384 + PS417_19685 0.66 +0.1 4,279,384 + PS417_19685 0.66 -1.4 4,279,385 - PS417_19685 0.66 -2.2 4,279,385 - PS417_19685 0.66 -0.3 4,279,385 - PS417_19685 0.66 +0.6 4,279,385 - PS417_19685 0.66 -0.5 4,279,385 - PS417_19685 0.66 +0.1 4,279,385 - PS417_19685 0.66 -0.4 4,279,647 - -3.4 4,279,656 - -3.7 4,279,747 + PS417_19690 0.19 -7.7 4,279,848 + PS417_19690 0.45 -1.6 4,279,848 + PS417_19690 0.45 -5.8 4,279,848 + PS417_19690 0.45 -3.3 4,279,848 + PS417_19690 0.45 -6.1 4,279,849 - PS417_19690 0.45 +0.5
Or see this region's nucleotide sequence