Strain Fitness in Pseudomonas simiae WCS417 around PS417_18570

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18565 and PS417_18570 are separated by 141 nucleotidesPS417_18570 and PS417_18575 are separated by 162 nucleotides PS417_18565: PS417_18565 - pseudouridine synthase, at 4,030,601 to 4,031,425 _18565 PS417_18570: PS417_18570 - peptidoglycan-binding protein, at 4,031,567 to 4,034,128 _18570 PS417_18575: PS417_18575 - aspartate-semialdehyde dehydrogenase, at 4,034,291 to 4,035,301 _18575 Position (kb) 4031 4032 4033 4034 4035Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4030.826 kb on - strand, within PS417_18565at 4031.441 kb on - strandat 4031.444 kb on + strandat 4031.444 kb on + strandat 4031.445 kb on - strandat 4031.445 kb on - strandat 4031.446 kb on + strandat 4031.679 kb on + strandat 4031.679 kb on + strandat 4031.680 kb on - strandat 4031.680 kb on - strandat 4031.680 kb on - strandat 4031.680 kb on - strandat 4032.258 kb on + strand, within PS417_18570at 4033.748 kb on + strand, within PS417_18570at 4033.748 kb on + strand, within PS417_18570at 4033.748 kb on + strand, within PS417_18570at 4033.748 kb on + strand, within PS417_18570at 4033.749 kb on - strand, within PS417_18570at 4033.749 kb on - strand, within PS417_18570at 4033.810 kb on - strand, within PS417_18570at 4033.810 kb on - strand, within PS417_18570at 4034.068 kb on + strandat 4034.269 kb on - strandat 4034.269 kb on - strandat 4034.293 kb on - strandat 4034.328 kb on - strandat 4034.355 kb on - strandat 4034.420 kb on + strand, within PS417_18575at 4034.421 kb on - strand, within PS417_18575at 4034.424 kb on + strand, within PS417_18575at 4034.424 kb on + strand, within PS417_18575at 4034.424 kb on + strand, within PS417_18575at 4034.424 kb on + strand, within PS417_18575at 4034.425 kb on - strand, within PS417_18575at 4034.652 kb on - strand, within PS417_18575at 4034.652 kb on - strand, within PS417_18575at 4034.674 kb on + strand, within PS417_18575at 4034.674 kb on + strand, within PS417_18575at 4034.675 kb on - strand, within PS417_18575at 4034.675 kb on - strand, within PS417_18575at 4034.675 kb on - strand, within PS417_18575at 4034.695 kb on + strand, within PS417_18575

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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4,030,826 - PS417_18565 0.27 -0.1
4,031,441 - -1.7
4,031,444 + -2.5
4,031,444 + -1.5
4,031,445 - -0.6
4,031,445 - -1.0
4,031,446 + -2.0
4,031,679 + -0.7
4,031,679 + -2.4
4,031,680 - -0.2
4,031,680 - -3.0
4,031,680 - -1.1
4,031,680 - +0.8
4,032,258 + PS417_18570 0.27 +0.2
4,033,748 + PS417_18570 0.85 -1.6
4,033,748 + PS417_18570 0.85 -3.3
4,033,748 + PS417_18570 0.85 -2.3
4,033,748 + PS417_18570 0.85 -1.8
4,033,749 - PS417_18570 0.85 -0.1
4,033,749 - PS417_18570 0.85 -0.8
4,033,810 - PS417_18570 0.88 +0.1
4,033,810 - PS417_18570 0.88 -2.1
4,034,068 + -4.9
4,034,269 - +1.9
4,034,269 - +1.7
4,034,293 - -0.7
4,034,328 - -1.1
4,034,355 - -1.3
4,034,420 + PS417_18575 0.13 -0.3
4,034,421 - PS417_18575 0.13 -0.9
4,034,424 + PS417_18575 0.13 -1.2
4,034,424 + PS417_18575 0.13 +1.2
4,034,424 + PS417_18575 0.13 -1.1
4,034,424 + PS417_18575 0.13 -0.6
4,034,425 - PS417_18575 0.13 -2.0
4,034,652 - PS417_18575 0.36 +0.4
4,034,652 - PS417_18575 0.36 -1.5
4,034,674 + PS417_18575 0.38 -0.1
4,034,674 + PS417_18575 0.38 -0.0
4,034,675 - PS417_18575 0.38 +2.7
4,034,675 - PS417_18575 0.38 +0.6
4,034,675 - PS417_18575 0.38 +0.4
4,034,695 + PS417_18575 0.40 -0.2

Or see this region's nucleotide sequence