Strain Fitness in Pseudomonas simiae WCS417 around PS417_16790

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16785 and PS417_16790 are separated by 4 nucleotidesPS417_16790 and PS417_16795 overlap by 4 nucleotidesPS417_16795 and PS417_16800 overlap by 4 nucleotides PS417_16785: PS417_16785 - ABC transporter permease, at 3,662,022 to 3,663,071 _16785 PS417_16790: PS417_16790 - ABC transporter permease, at 3,663,076 to 3,663,957 _16790 PS417_16795: PS417_16795 - ABC transporter, at 3,663,954 to 3,664,727 _16795 PS417_16800: PS417_16800 - acyl-CoA synthetase, at 3,664,724 to 3,665,626 _16800 Position (kb) 3663 3664Strain fitness (log2 ratio) -1 0 1at 3662.374 kb on + strand, within PS417_16785at 3662.408 kb on - strand, within PS417_16785at 3662.695 kb on + strand, within PS417_16785at 3662.695 kb on + strand, within PS417_16785at 3662.696 kb on - strandat 3662.815 kb on + strand, within PS417_16785at 3662.875 kb on + strand, within PS417_16785at 3662.950 kb on + strand, within PS417_16785at 3663.123 kb on + strandat 3663.125 kb on + strandat 3663.125 kb on + strandat 3663.126 kb on - strandat 3663.126 kb on - strandat 3663.146 kb on - strandat 3663.146 kb on - strandat 3663.149 kb on + strandat 3663.150 kb on - strandat 3663.194 kb on + strand, within PS417_16790at 3663.195 kb on - strand, within PS417_16790at 3663.906 kb on - strandat 3663.906 kb on - strandat 3663.977 kb on - strandat 3664.132 kb on - strand, within PS417_16795at 3664.794 kb on + strandat 3664.794 kb on + strandat 3664.795 kb on - strandat 3664.795 kb on - strandat 3664.795 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,662,374 + PS417_16785 0.34 +0.4
3,662,408 - PS417_16785 0.37 -0.4
3,662,695 + PS417_16785 0.64 -1.7
3,662,695 + PS417_16785 0.64 -0.2
3,662,696 - +1.5
3,662,815 + PS417_16785 0.76 -1.5
3,662,875 + PS417_16785 0.81 -0.6
3,662,950 + PS417_16785 0.88 +0.2
3,663,123 + +1.0
3,663,125 + -0.8
3,663,125 + +1.6
3,663,126 - +0.5
3,663,126 - -0.5
3,663,146 - -1.3
3,663,146 - -0.5
3,663,149 + +0.6
3,663,150 - +0.5
3,663,194 + PS417_16790 0.13 +0.4
3,663,195 - PS417_16790 0.13 +1.0
3,663,906 - -1.0
3,663,906 - +0.2
3,663,977 - +0.2
3,664,132 - PS417_16795 0.23 -0.3
3,664,794 + -0.9
3,664,794 + +0.4
3,664,795 - +1.0
3,664,795 - +0.5
3,664,795 - -0.0

Or see this region's nucleotide sequence