Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16785 and PS417_16790 are separated by 4 nucleotides PS417_16790 and PS417_16795 overlap by 4 nucleotides PS417_16795 and PS417_16800 overlap by 4 nucleotides
PS417_16785: PS417_16785 - ABC transporter permease, at 3,662,022 to 3,663,071
_16785
PS417_16790: PS417_16790 - ABC transporter permease, at 3,663,076 to 3,663,957
_16790
PS417_16795: PS417_16795 - ABC transporter, at 3,663,954 to 3,664,727
_16795
PS417_16800: PS417_16800 - acyl-CoA synthetase, at 3,664,724 to 3,665,626
_16800
Position (kb)
3663
3664 Strain fitness (log2 ratio)
-1
0
1 at 3662.374 kb on + strand, within PS417_16785 at 3662.408 kb on - strand, within PS417_16785 at 3662.695 kb on + strand, within PS417_16785 at 3662.695 kb on + strand, within PS417_16785 at 3662.696 kb on - strand at 3662.815 kb on + strand, within PS417_16785 at 3662.875 kb on + strand, within PS417_16785 at 3662.950 kb on + strand, within PS417_16785 at 3663.123 kb on + strand at 3663.125 kb on + strand at 3663.125 kb on + strand at 3663.126 kb on - strand at 3663.126 kb on - strand at 3663.146 kb on - strand at 3663.146 kb on - strand at 3663.149 kb on + strand at 3663.150 kb on - strand at 3663.194 kb on + strand, within PS417_16790 at 3663.195 kb on - strand, within PS417_16790 at 3663.906 kb on - strand at 3663.906 kb on - strand at 3663.977 kb on - strand at 3664.132 kb on - strand, within PS417_16795 at 3664.794 kb on + strand at 3664.794 kb on + strand at 3664.795 kb on - strand at 3664.795 kb on - strand at 3664.795 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,662,374 + PS417_16785 0.34 +0.4 3,662,408 - PS417_16785 0.37 -0.4 3,662,695 + PS417_16785 0.64 -1.7 3,662,695 + PS417_16785 0.64 -0.2 3,662,696 - +1.5 3,662,815 + PS417_16785 0.76 -1.5 3,662,875 + PS417_16785 0.81 -0.6 3,662,950 + PS417_16785 0.88 +0.2 3,663,123 + +1.0 3,663,125 + -0.8 3,663,125 + +1.6 3,663,126 - +0.5 3,663,126 - -0.5 3,663,146 - -1.3 3,663,146 - -0.5 3,663,149 + +0.6 3,663,150 - +0.5 3,663,194 + PS417_16790 0.13 +0.4 3,663,195 - PS417_16790 0.13 +1.0 3,663,906 - -1.0 3,663,906 - +0.2 3,663,977 - +0.2 3,664,132 - PS417_16795 0.23 -0.3 3,664,794 + -0.9 3,664,794 + +0.4 3,664,795 - +1.0 3,664,795 - +0.5 3,664,795 - -0.0
Or see this region's nucleotide sequence