Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13315 and PS417_13320 overlap by 4 nucleotides PS417_13320 and PS417_13325 overlap by 14 nucleotides PS417_13325 and PS417_13330 are separated by 15 nucleotides
PS417_13315: PS417_13315 - hypothetical protein, at 2,925,738 to 2,927,459
_13315
PS417_13320: PS417_13320 - L-alanine-DL-glutamate epimerase, at 2,927,456 to 2,928,649
_13320
PS417_13325: PS417_13325 - hypothetical protein, at 2,928,636 to 2,929,514
_13325
PS417_13330: PS417_13330 - autotransporter, at 2,929,530 to 2,931,185
_13330
Position (kb)
2927
2928
2929 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2926.969 kb on + strand, within PS417_13315 at 2926.970 kb on - strand, within PS417_13315 at 2926.970 kb on - strand, within PS417_13315 at 2927.272 kb on + strand, within PS417_13315 at 2927.272 kb on + strand, within PS417_13315 at 2927.273 kb on - strand, within PS417_13315 at 2927.273 kb on - strand, within PS417_13315 at 2927.404 kb on + strand at 2927.405 kb on - strand at 2927.452 kb on + strand at 2927.453 kb on - strand at 2927.600 kb on - strand, within PS417_13320 at 2927.748 kb on + strand, within PS417_13320 at 2928.270 kb on + strand, within PS417_13320 at 2928.271 kb on - strand, within PS417_13320 at 2928.271 kb on - strand, within PS417_13320 at 2928.271 kb on - strand at 2928.387 kb on + strand, within PS417_13320 at 2928.387 kb on + strand, within PS417_13320 at 2928.501 kb on + strand, within PS417_13320 at 2928.501 kb on + strand, within PS417_13320 at 2928.631 kb on - strand at 2928.649 kb on + strand at 2928.649 kb on + strand at 2928.728 kb on - strand, within PS417_13325 at 2929.253 kb on + strand, within PS417_13325 at 2929.253 kb on + strand, within PS417_13325 at 2929.254 kb on - strand, within PS417_13325 at 2929.254 kb on - strand, within PS417_13325 at 2929.396 kb on + strand, within PS417_13325 at 2929.579 kb on + strand at 2929.579 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,926,969 + PS417_13315 0.71 +0.2 2,926,970 - PS417_13315 0.72 +0.1 2,926,970 - PS417_13315 0.72 -3.1 2,927,272 + PS417_13315 0.89 -0.6 2,927,272 + PS417_13315 0.89 +1.7 2,927,273 - PS417_13315 0.89 +0.5 2,927,273 - PS417_13315 0.89 -1.7 2,927,404 + +0.3 2,927,405 - +0.2 2,927,452 + +0.5 2,927,453 - +1.0 2,927,600 - PS417_13320 0.12 -0.1 2,927,748 + PS417_13320 0.24 -0.0 2,928,270 + PS417_13320 0.68 +2.1 2,928,271 - PS417_13320 0.68 -0.5 2,928,271 - PS417_13320 0.68 -0.0 2,928,271 - -0.6 2,928,387 + PS417_13320 0.78 +0.4 2,928,387 + PS417_13320 0.78 -0.2 2,928,501 + PS417_13320 0.88 -0.2 2,928,501 + PS417_13320 0.88 +0.0 2,928,631 - -0.9 2,928,649 + -0.0 2,928,649 + +0.5 2,928,728 - PS417_13325 0.10 -1.0 2,929,253 + PS417_13325 0.70 +0.1 2,929,253 + PS417_13325 0.70 +0.2 2,929,254 - PS417_13325 0.70 -0.7 2,929,254 - PS417_13325 0.70 -1.5 2,929,396 + PS417_13325 0.86 -2.0 2,929,579 + -0.0 2,929,579 + -1.8
Or see this region's nucleotide sequence