Strain Fitness in Pseudomonas simiae WCS417 around PS417_12365

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12355 and PS417_12360 are separated by 53 nucleotidesPS417_12360 and PS417_12365 are separated by 114 nucleotidesPS417_12365 and PS417_12370 are separated by 144 nucleotides PS417_12355: PS417_12355 - magnesium chelatase, at 2,688,136 to 2,689,134 _12355 PS417_12360: PS417_12360 - magnesium chelatase, at 2,689,188 to 2,689,790 _12360 PS417_12365: PS417_12365 - cobalt chelatase, at 2,689,905 to 2,690,852 _12365 PS417_12370: PS417_12370 - inorganic polyphosphate kinase, at 2,690,997 to 2,691,887 _12370 Position (kb) 2689 2690 2691Strain fitness (log2 ratio) -2 -1 0 1at 2688.939 kb on + strand, within PS417_12355at 2688.940 kb on - strand, within PS417_12355at 2689.294 kb on - strand, within PS417_12360at 2689.775 kb on + strandat 2689.789 kb on - strandat 2689.890 kb on + strandat 2689.891 kb on - strandat 2689.891 kb on - strandat 2690.240 kb on - strand, within PS417_12365at 2690.283 kb on + strand, within PS417_12365at 2690.283 kb on + strand, within PS417_12365at 2690.284 kb on - strand, within PS417_12365at 2690.284 kb on - strand, within PS417_12365at 2690.284 kb on - strand, within PS417_12365at 2690.441 kb on - strand, within PS417_12365at 2690.599 kb on + strand, within PS417_12365at 2690.600 kb on - strand, within PS417_12365at 2690.872 kb on - strandat 2690.897 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,688,939 + PS417_12355 0.80 -0.8
2,688,940 - PS417_12355 0.80 -1.4
2,689,294 - PS417_12360 0.18 -0.8
2,689,775 + -0.3
2,689,789 - -0.5
2,689,890 + +0.4
2,689,891 - +0.2
2,689,891 - -2.3
2,690,240 - PS417_12365 0.35 -1.6
2,690,283 + PS417_12365 0.40 -2.1
2,690,283 + PS417_12365 0.40 -0.1
2,690,284 - PS417_12365 0.40 -1.8
2,690,284 - PS417_12365 0.40 -0.4
2,690,284 - PS417_12365 0.40 +0.4
2,690,441 - PS417_12365 0.57 -1.6
2,690,599 + PS417_12365 0.73 -0.8
2,690,600 - PS417_12365 0.73 -1.9
2,690,872 - +0.2
2,690,897 + -0.0

Or see this region's nucleotide sequence