Strain Fitness in Pseudomonas simiae WCS417 around PS417_12095

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12080 and PS417_12085 overlap by 11 nucleotidesPS417_12085 and PS417_12090 are separated by 64 nucleotidesPS417_12090 and PS417_12095 are separated by 333 nucleotidesPS417_12095 and PS417_12100 are separated by 51 nucleotidesPS417_12100 and PS417_12105 are separated by 11 nucleotides PS417_12080: PS417_12080 - membrane protein, at 2,623,762 to 2,625,324 _12080 PS417_12085: PS417_12085 - thioredoxin, at 2,625,314 to 2,625,649 _12085 PS417_12090: PS417_12090 - hypothetical protein, at 2,625,714 to 2,625,962 _12090 PS417_12095: PS417_12095 - ABC transporter substrate-binding protein, at 2,626,296 to 2,627,144 _12095 PS417_12100: PS417_12100 - amino acid ABC transporter permease, at 2,627,196 to 2,627,858 _12100 PS417_12105: PS417_12105 - ABC transporter permease, at 2,627,870 to 2,628,532 _12105 Position (kb) 2626 2627 2628Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2625.342 kb on + strandat 2625.343 kb on - strandat 2625.415 kb on - strand, within PS417_12085at 2625.501 kb on + strand, within PS417_12085at 2625.501 kb on + strand, within PS417_12085at 2625.565 kb on + strandat 2625.565 kb on + strand, within PS417_12085at 2625.565 kb on + strand, within PS417_12085at 2625.565 kb on + strand, within PS417_12085at 2625.565 kb on + strand, within PS417_12085at 2625.566 kb on - strand, within PS417_12085at 2625.642 kb on + strandat 2625.643 kb on - strandat 2625.838 kb on + strand, within PS417_12090at 2625.839 kb on - strand, within PS417_12090at 2625.839 kb on - strand, within PS417_12090at 2625.839 kb on - strand, within PS417_12090at 2626.245 kb on + strandat 2626.319 kb on + strandat 2626.713 kb on + strand, within PS417_12095at 2626.713 kb on + strand, within PS417_12095at 2626.831 kb on - strand, within PS417_12095at 2626.851 kb on + strand, within PS417_12095at 2626.851 kb on + strand, within PS417_12095at 2626.852 kb on - strand, within PS417_12095at 2626.852 kb on - strand, within PS417_12095at 2626.852 kb on - strand, within PS417_12095at 2626.912 kb on - strand, within PS417_12095at 2626.912 kb on - strand, within PS417_12095at 2626.912 kb on - strand, within PS417_12095at 2626.974 kb on + strandat 2627.067 kb on + strandat 2627.068 kb on - strandat 2627.099 kb on - strandat 2627.099 kb on - strandat 2627.143 kb on - strandat 2627.185 kb on + strandat 2627.202 kb on + strandat 2627.203 kb on - strandat 2627.373 kb on + strand, within PS417_12100at 2627.374 kb on - strand, within PS417_12100at 2627.394 kb on - strandat 2627.424 kb on + strand, within PS417_12100at 2627.424 kb on + strand, within PS417_12100at 2627.425 kb on - strand, within PS417_12100at 2627.505 kb on + strand, within PS417_12100at 2627.505 kb on + strandat 2627.718 kb on + strand, within PS417_12100at 2627.718 kb on + strand, within PS417_12100at 2627.718 kb on + strand, within PS417_12100at 2627.719 kb on - strand, within PS417_12100at 2627.721 kb on + strand, within PS417_12100at 2627.722 kb on - strand, within PS417_12100at 2627.787 kb on + strand, within PS417_12100at 2627.873 kb on + strandat 2627.948 kb on + strand, within PS417_12105at 2627.968 kb on + strand, within PS417_12105at 2628.015 kb on - strand, within PS417_12105at 2628.050 kb on + strand, within PS417_12105at 2628.051 kb on - strand, within PS417_12105at 2628.084 kb on + strand, within PS417_12105at 2628.105 kb on - strand, within PS417_12105

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,625,342 + -0.0
2,625,343 - -0.8
2,625,415 - PS417_12085 0.30 +0.6
2,625,501 + PS417_12085 0.56 +0.8
2,625,501 + PS417_12085 0.56 +1.3
2,625,565 + -0.2
2,625,565 + PS417_12085 0.75 +0.3
2,625,565 + PS417_12085 0.75 +0.8
2,625,565 + PS417_12085 0.75 -1.1
2,625,565 + PS417_12085 0.75 -0.6
2,625,566 - PS417_12085 0.75 -2.7
2,625,642 + -2.5
2,625,643 - -1.7
2,625,838 + PS417_12090 0.50 -0.1
2,625,839 - PS417_12090 0.50 -0.4
2,625,839 - PS417_12090 0.50 -0.3
2,625,839 - PS417_12090 0.50 -3.5
2,626,245 + +3.0
2,626,319 + +0.1
2,626,713 + PS417_12095 0.49 -0.0
2,626,713 + PS417_12095 0.49 +0.3
2,626,831 - PS417_12095 0.63 +1.9
2,626,851 + PS417_12095 0.65 +0.2
2,626,851 + PS417_12095 0.65 -2.6
2,626,852 - PS417_12095 0.65 +0.6
2,626,852 - PS417_12095 0.65 -0.4
2,626,852 - PS417_12095 0.65 +1.3
2,626,912 - PS417_12095 0.73 +1.3
2,626,912 - PS417_12095 0.73 -1.1
2,626,912 - PS417_12095 0.73 +1.0
2,626,974 + -0.3
2,627,067 + -1.8
2,627,068 - +1.0
2,627,099 - +0.1
2,627,099 - +0.5
2,627,143 - +0.7
2,627,185 + +2.6
2,627,202 + -0.5
2,627,203 - +0.2
2,627,373 + PS417_12100 0.27 -0.4
2,627,374 - PS417_12100 0.27 -0.7
2,627,394 - -1.3
2,627,424 + PS417_12100 0.34 -0.1
2,627,424 + PS417_12100 0.34 -1.7
2,627,425 - PS417_12100 0.35 -0.4
2,627,505 + PS417_12100 0.47 +0.9
2,627,505 + -1.9
2,627,718 + PS417_12100 0.79 +0.7
2,627,718 + PS417_12100 0.79 +1.3
2,627,718 + PS417_12100 0.79 +0.6
2,627,719 - PS417_12100 0.79 +1.6
2,627,721 + PS417_12100 0.79 +1.4
2,627,722 - PS417_12100 0.79 +0.8
2,627,787 + PS417_12100 0.89 -2.3
2,627,873 + -1.3
2,627,948 + PS417_12105 0.12 +0.4
2,627,968 + PS417_12105 0.15 -2.3
2,628,015 - PS417_12105 0.22 +1.2
2,628,050 + PS417_12105 0.27 -0.5
2,628,051 - PS417_12105 0.27 +0.5
2,628,084 + PS417_12105 0.32 -0.3
2,628,105 - PS417_12105 0.35 -1.7

Or see this region's nucleotide sequence