Strain Fitness in Pseudomonas simiae WCS417 around PS417_10545

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10540 and PS417_10545 are separated by 8 nucleotidesPS417_10545 and PS417_10550 are separated by 131 nucleotides PS417_10540: PS417_10540 - NAD-dependent deacetylase, at 2,248,403 to 2,249,248 _10540 PS417_10545: PS417_10545 - histidine kinase, at 2,249,257 to 2,249,697 _10545 PS417_10550: PS417_10550 - DNA topoisomerase III, at 2,249,829 to 2,251,778 _10550 Position (kb) 2249 2250Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2248.377 kb on + strandat 2248.378 kb on - strandat 2248.398 kb on - strandat 2248.557 kb on + strand, within PS417_10540at 2248.661 kb on + strandat 2248.662 kb on - strand, within PS417_10540at 2249.082 kb on + strand, within PS417_10540at 2249.082 kb on + strand, within PS417_10540at 2249.227 kb on + strandat 2249.227 kb on + strandat 2249.227 kb on + strandat 2249.227 kb on + strandat 2249.228 kb on - strandat 2249.273 kb on + strandat 2249.274 kb on - strandat 2249.274 kb on - strandat 2249.274 kb on - strandat 2249.274 kb on - strandat 2249.274 kb on - strandat 2249.431 kb on - strand, within PS417_10545at 2249.741 kb on - strandat 2249.751 kb on - strandat 2249.894 kb on + strandat 2249.894 kb on + strandat 2250.299 kb on + strand, within PS417_10550at 2250.542 kb on - strand, within PS417_10550at 2250.592 kb on + strand, within PS417_10550

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,248,377 + -0.3
2,248,378 - -0.3
2,248,398 - +1.8
2,248,557 + PS417_10540 0.18 -0.0
2,248,661 + -0.7
2,248,662 - PS417_10540 0.31 -2.5
2,249,082 + PS417_10540 0.80 +1.0
2,249,082 + PS417_10540 0.80 +0.2
2,249,227 + +0.2
2,249,227 + +1.2
2,249,227 + -0.8
2,249,227 + +0.8
2,249,228 - +0.1
2,249,273 + -1.1
2,249,274 - -0.3
2,249,274 - -0.0
2,249,274 - -0.6
2,249,274 - +2.1
2,249,274 - +0.0
2,249,431 - PS417_10545 0.39 -0.4
2,249,741 - -1.7
2,249,751 - -0.5
2,249,894 + +3.2
2,249,894 + +1.4
2,250,299 + PS417_10550 0.24 +0.6
2,250,542 - PS417_10550 0.37 -0.5
2,250,592 + PS417_10550 0.39 +0.5

Or see this region's nucleotide sequence