Strain Fitness in Pseudomonas simiae WCS417 around PS417_10140

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10130 and PS417_10135 are separated by 72 nucleotidesPS417_10135 and PS417_10140 are separated by 3 nucleotidesPS417_10140 and PS417_10145 are separated by 47 nucleotidesPS417_10145 and PS417_10150 are separated by 27 nucleotides PS417_10130: PS417_10130 - hypothetical protein, at 2,169,624 to 2,170,040 _10130 PS417_10135: PS417_10135 - phage tail protein, at 2,170,113 to 2,170,769 _10135 PS417_10140: PS417_10140 - hypothetical protein, at 2,170,773 to 2,171,153 _10140 PS417_10145: PS417_10145 - hypothetical protein, at 2,171,201 to 2,171,473 _10145 PS417_10150: PS417_10150 - tail protein, at 2,171,501 to 2,174,587 _10150 Position (kb) 2170 2171 2172Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2169.912 kb on + strand, within PS417_10130at 2169.913 kb on - strand, within PS417_10130at 2169.996 kb on + strand, within PS417_10130at 2169.996 kb on + strand, within PS417_10130at 2169.996 kb on + strand, within PS417_10130at 2169.997 kb on - strand, within PS417_10130at 2169.998 kb on + strand, within PS417_10130at 2169.999 kb on - strandat 2169.999 kb on - strandat 2170.108 kb on + strandat 2170.108 kb on + strandat 2170.109 kb on - strandat 2170.157 kb on + strandat 2170.158 kb on - strandat 2170.161 kb on + strandat 2170.461 kb on + strand, within PS417_10135at 2170.462 kb on - strand, within PS417_10135at 2170.768 kb on - strandat 2171.340 kb on - strand, within PS417_10145at 2171.340 kb on - strand, within PS417_10145at 2171.340 kb on - strand, within PS417_10145at 2171.486 kb on - strandat 2171.486 kb on - strandat 2171.931 kb on - strand, within PS417_10150at 2171.931 kb on - strandat 2171.964 kb on - strand, within PS417_10150at 2172.040 kb on - strand, within PS417_10150at 2172.040 kb on - strand, within PS417_10150

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,169,912 + PS417_10130 0.69 -1.4
2,169,913 - PS417_10130 0.69 -0.2
2,169,996 + PS417_10130 0.89 -0.1
2,169,996 + PS417_10130 0.89 -0.6
2,169,996 + PS417_10130 0.89 -0.4
2,169,997 - PS417_10130 0.89 -1.0
2,169,998 + PS417_10130 0.90 -1.2
2,169,999 - -0.4
2,169,999 - -1.6
2,170,108 + -1.8
2,170,108 + +1.5
2,170,109 - +0.9
2,170,157 + +1.3
2,170,158 - +0.1
2,170,161 + -1.9
2,170,461 + PS417_10135 0.53 -0.8
2,170,462 - PS417_10135 0.53 +0.4
2,170,768 - -0.0
2,171,340 - PS417_10145 0.51 -0.8
2,171,340 - PS417_10145 0.51 -1.0
2,171,340 - PS417_10145 0.51 -3.3
2,171,486 - -0.3
2,171,486 - +2.3
2,171,931 - PS417_10150 0.14 -0.3
2,171,931 - +3.2
2,171,964 - PS417_10150 0.15 +0.5
2,172,040 - PS417_10150 0.17 -2.4
2,172,040 - PS417_10150 0.17 +0.3

Or see this region's nucleotide sequence