Strain Fitness in Pseudomonas simiae WCS417 around PS417_00050

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00045 and PS417_00050 are separated by 82 nucleotidesPS417_00050 and PS417_00055 are separated by 5 nucleotides PS417_00045: PS417_00045 - glycerol acyltransferase, at 10,898 to 11,668 _00045 PS417_00050: PS417_00050 - histidinol phosphatase, at 11,751 to 12,284 _00050 PS417_00055: PS417_00055 - glycine-tRNA synthetase subunit beta, at 12,290 to 14,344 _00055 Position (kb) 11 12 13Strain fitness (log2 ratio) -3 -2 -1 0 1at 10.900 kb on - strandat 10.900 kb on - strandat 11.028 kb on + strand, within PS417_00045at 11.679 kb on - strandat 11.679 kb on - strandat 11.753 kb on - strandat 11.763 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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10,900 - +0.4
10,900 - -2.3
11,028 + PS417_00045 0.17 -3.4
11,679 - -3.3
11,679 - -2.1
11,753 - -2.3
11,763 - -0.3

Or see this region's nucleotide sequence