Strain Fitness in Pseudomonas simiae WCS417 around PS417_25635

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25625 and PS417_25630 are separated by 7 nucleotidesPS417_25630 and PS417_25635 overlap by 11 nucleotidesPS417_25635 and PS417_25640 are separated by 185 nucleotides PS417_25625: PS417_25625 - hypothetical protein, at 5,536,044 to 5,536,490 _25625 PS417_25630: PS417_25630 - pantothenate kinase, at 5,536,498 to 5,537,247 _25630 PS417_25635: PS417_25635 - biotin--protein ligase, at 5,537,237 to 5,538,196 _25635 PS417_25640: PS417_25640 - tyrosine--tRNA ligase, at 5,538,382 to 5,539,581 _25640 Position (kb) 5537 5538 5539Strain fitness (log2 ratio) -3 -2 -1 0 1at 5536.282 kb on + strand, within PS417_25625at 5536.282 kb on + strand, within PS417_25625at 5536.283 kb on - strand, within PS417_25625at 5536.283 kb on - strand, within PS417_25625at 5536.283 kb on - strand, within PS417_25625at 5536.292 kb on + strand, within PS417_25625at 5536.384 kb on + strand, within PS417_25625at 5536.385 kb on - strand, within PS417_25625at 5536.385 kb on - strand, within PS417_25625at 5536.385 kb on - strand, within PS417_25625at 5536.444 kb on + strand, within PS417_25625at 5536.445 kb on - strand, within PS417_25625at 5536.445 kb on - strand, within PS417_25625at 5536.447 kb on + strandat 5536.447 kb on + strandat 5536.447 kb on + strandat 5536.448 kb on - strandat 5536.448 kb on - strandat 5536.490 kb on + strandat 5536.491 kb on - strandat 5538.059 kb on - strand, within PS417_25635at 5538.059 kb on - strand, within PS417_25635at 5538.059 kb on - strand, within PS417_25635at 5538.059 kb on - strand, within PS417_25635at 5538.059 kb on - strand, within PS417_25635at 5538.059 kb on - strand, within PS417_25635at 5538.063 kb on - strand, within PS417_25635at 5538.063 kb on - strand, within PS417_25635at 5538.229 kb on + strandat 5538.268 kb on + strandat 5538.269 kb on - strandat 5538.351 kb on + strandat 5538.351 kb on + strandat 5538.371 kb on + strandat 5538.371 kb on + strandat 5538.371 kb on + strandat 5538.372 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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5,536,282 + PS417_25625 0.53 -2.6
5,536,282 + PS417_25625 0.53 +1.4
5,536,283 - PS417_25625 0.53 -2.9
5,536,283 - PS417_25625 0.53 +0.4
5,536,283 - PS417_25625 0.53 +0.2
5,536,292 + PS417_25625 0.55 -0.6
5,536,384 + PS417_25625 0.76 -0.6
5,536,385 - PS417_25625 0.76 -1.8
5,536,385 - PS417_25625 0.76 -0.2
5,536,385 - PS417_25625 0.76 -0.4
5,536,444 + PS417_25625 0.89 -0.6
5,536,445 - PS417_25625 0.90 +0.3
5,536,445 - PS417_25625 0.90 -0.2
5,536,447 + -0.7
5,536,447 + +0.2
5,536,447 + -0.5
5,536,448 - +0.9
5,536,448 - +1.6
5,536,490 + -1.6
5,536,491 - +0.1
5,538,059 - PS417_25635 0.86 +0.2
5,538,059 - PS417_25635 0.86 -0.5
5,538,059 - PS417_25635 0.86 -0.6
5,538,059 - PS417_25635 0.86 -0.3
5,538,059 - PS417_25635 0.86 -0.2
5,538,059 - PS417_25635 0.86 -2.6
5,538,063 - PS417_25635 0.86 -0.9
5,538,063 - PS417_25635 0.86 -1.2
5,538,229 + -0.2
5,538,268 + +0.7
5,538,269 - -1.7
5,538,351 + -0.9
5,538,351 + -0.1
5,538,371 + +1.0
5,538,371 + -0.2
5,538,371 + -0.2
5,538,372 - -1.0

Or see this region's nucleotide sequence