Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11670 and PS417_11675 overlap by 17 nucleotides PS417_11675 and PS417_11680 are separated by 140 nucleotides PS417_11680 and PS417_11690 are separated by 505 nucleotides
PS417_11670: PS417_11670 - multidrug transporter MATE, at 2,510,985 to 2,512,340
_11670
PS417_11675: PS417_11675 - TetR family transcriptional regulator, at 2,512,324 to 2,512,911
_11675
PS417_11680: PS417_11680 - MFS transporter, at 2,513,052 to 2,514,224
_11680
PS417_11690: PS417_11690 - peptide synthase, at 2,514,730 to 2,528,769
_11690
Position (kb)
2513
2514
2515 Strain fitness (log2 ratio)
-2
-1
0
1 at 2512.206 kb on + strand at 2512.206 kb on + strand at 2512.206 kb on + strand at 2512.914 kb on + strand at 2512.980 kb on - strand at 2513.105 kb on - strand at 2513.216 kb on - strand, within PS417_11680 at 2513.216 kb on - strand, within PS417_11680 at 2513.216 kb on - strand, within PS417_11680 at 2513.588 kb on - strand, within PS417_11680 at 2513.815 kb on - strand, within PS417_11680 at 2513.815 kb on - strand, within PS417_11680 at 2514.232 kb on - strand at 2514.232 kb on - strand at 2514.427 kb on - strand at 2514.429 kb on + strand at 2514.469 kb on + strand at 2514.470 kb on - strand at 2514.609 kb on + strand at 2514.610 kb on - strand at 2514.709 kb on + strand at 2514.943 kb on + strand at 2514.944 kb on - strand at 2514.944 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 2,512,206 + -0.7 2,512,206 + +0.1 2,512,206 + +0.0 2,512,914 + +0.4 2,512,980 - +1.1 2,513,105 - -0.5 2,513,216 - PS417_11680 0.14 -0.8 2,513,216 - PS417_11680 0.14 +0.2 2,513,216 - PS417_11680 0.14 -0.9 2,513,588 - PS417_11680 0.46 -1.0 2,513,815 - PS417_11680 0.65 -0.6 2,513,815 - PS417_11680 0.65 -0.0 2,514,232 - +0.2 2,514,232 - -1.1 2,514,427 - -0.7 2,514,429 + +0.1 2,514,469 + -0.9 2,514,470 - -2.2 2,514,609 + +0.4 2,514,610 - -0.7 2,514,709 + -0.0 2,514,943 + +0.3 2,514,944 - -0.0 2,514,944 - -1.1
Or see this region's nucleotide sequence