Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11015 and PS417_11020 are separated by 36 nucleotides PS417_11020 and PS417_11025 are separated by 37 nucleotides
PS417_11015: PS417_11015 - Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) , at 2,360,549 to 2,362,129
_11015
PS417_11020: PS417_11020 - L-arabinolactonase (EC 3.1.1.15) (from data) , at 2,362,166 to 2,363,029
_11020
PS417_11025: PS417_11025 - sugar ABC transporter substrate-binding protein, at 2,363,067 to 2,364,071
_11025
Position (kb)
2362
2363
2364 Strain fitness (log2 ratio)
-2
-1
0
1 at 2361.681 kb on + strand, within PS417_11015 at 2361.681 kb on + strand, within PS417_11015 at 2361.682 kb on - strand, within PS417_11015 at 2361.682 kb on - strand, within PS417_11015 at 2361.682 kb on - strand, within PS417_11015 at 2362.043 kb on - strand at 2362.174 kb on + strand at 2362.569 kb on + strand, within PS417_11020 at 2362.791 kb on - strand, within PS417_11020 at 2362.791 kb on - strand, within PS417_11020 at 2363.041 kb on + strand at 2363.466 kb on + strand, within PS417_11025 at 2363.559 kb on + strand, within PS417_11025 at 2363.559 kb on + strand, within PS417_11025 at 2363.560 kb on - strand, within PS417_11025 at 2363.560 kb on - strand, within PS417_11025 at 2363.560 kb on - strand, within PS417_11025 at 2363.560 kb on - strand, within PS417_11025 at 2363.934 kb on + strand, within PS417_11025 at 2363.935 kb on - strand, within PS417_11025 at 2363.937 kb on - strand, within PS417_11025 at 2363.955 kb on + strand, within PS417_11025 at 2363.955 kb on + strand, within PS417_11025 at 2363.956 kb on - strand, within PS417_11025 at 2363.956 kb on - strand, within PS417_11025
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 2,361,681 + PS417_11015 0.72 -0.4 2,361,681 + PS417_11015 0.72 +0.4 2,361,682 - PS417_11015 0.72 +0.0 2,361,682 - PS417_11015 0.72 +0.9 2,361,682 - PS417_11015 0.72 +1.0 2,362,043 - +1.5 2,362,174 + -0.4 2,362,569 + PS417_11020 0.47 -0.5 2,362,791 - PS417_11020 0.72 -1.9 2,362,791 - PS417_11020 0.72 -0.4 2,363,041 + +0.4 2,363,466 + PS417_11025 0.40 -2.4 2,363,559 + PS417_11025 0.49 -0.6 2,363,559 + PS417_11025 0.49 +1.7 2,363,560 - PS417_11025 0.49 +0.3 2,363,560 - PS417_11025 0.49 +0.9 2,363,560 - PS417_11025 0.49 +0.9 2,363,560 - PS417_11025 0.49 +0.3 2,363,934 + PS417_11025 0.86 -0.6 2,363,935 - PS417_11025 0.86 -0.4 2,363,937 - PS417_11025 0.87 -2.2 2,363,955 + PS417_11025 0.88 -0.0 2,363,955 + PS417_11025 0.88 -0.1 2,363,956 - PS417_11025 0.88 -0.1 2,363,956 - PS417_11025 0.88 +0.5
Or see this region's nucleotide sequence