Strain Fitness in Pseudomonas simiae WCS417 around PS417_09040

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09030 and PS417_09035 are separated by 102 nucleotidesPS417_09035 and PS417_09040 are separated by 72 nucleotidesPS417_09040 and PS417_09045 are separated by 64 nucleotides PS417_09030: PS417_09030 - alpha/beta hydrolase, at 1,966,019 to 1,966,873 _09030 PS417_09035: PS417_09035 - hypothetical protein, at 1,966,976 to 1,967,794 _09035 PS417_09040: PS417_09040 - hypothetical protein, at 1,967,867 to 1,968,928 _09040 PS417_09045: PS417_09045 - histidine kinase, at 1,968,993 to 1,970,024 _09045 Position (kb) 1967 1968 1969Strain fitness (log2 ratio) -2 -1 0 1 2at 1966.975 kb on + strandat 1966.975 kb on + strandat 1966.976 kb on - strandat 1966.997 kb on - strandat 1967.134 kb on + strand, within PS417_09035at 1967.135 kb on - strand, within PS417_09035at 1967.138 kb on + strand, within PS417_09035at 1967.226 kb on - strand, within PS417_09035at 1967.496 kb on + strand, within PS417_09035at 1967.798 kb on + strandat 1967.830 kb on - strandat 1967.842 kb on + strandat 1967.842 kb on + strandat 1967.864 kb on + strandat 1967.864 kb on + strandat 1967.865 kb on - strandat 1967.865 kb on - strandat 1967.875 kb on + strandat 1968.182 kb on - strand, within PS417_09040at 1968.281 kb on + strand, within PS417_09040at 1968.452 kb on + strand, within PS417_09040at 1968.452 kb on + strand, within PS417_09040at 1968.453 kb on - strand, within PS417_09040at 1968.455 kb on + strand, within PS417_09040at 1968.671 kb on + strand, within PS417_09040at 1968.671 kb on + strand, within PS417_09040at 1968.672 kb on - strand, within PS417_09040at 1968.678 kb on - strand, within PS417_09040at 1968.863 kb on + strandat 1968.863 kb on + strandat 1969.327 kb on - strand, within PS417_09045at 1969.454 kb on - strand, within PS417_09045at 1969.454 kb on - strand, within PS417_09045at 1969.647 kb on - strand, within PS417_09045at 1969.777 kb on + strand, within PS417_09045

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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1,966,975 + -0.3
1,966,975 + +0.0
1,966,976 - -1.1
1,966,997 - -0.5
1,967,134 + PS417_09035 0.19 +0.8
1,967,135 - PS417_09035 0.19 -0.4
1,967,138 + PS417_09035 0.20 -0.4
1,967,226 - PS417_09035 0.31 +1.2
1,967,496 + PS417_09035 0.63 -1.2
1,967,798 + -0.2
1,967,830 - -1.0
1,967,842 + +0.1
1,967,842 + +0.8
1,967,864 + -0.3
1,967,864 + -0.9
1,967,865 - -0.7
1,967,865 - +2.0
1,967,875 + -0.3
1,968,182 - PS417_09040 0.30 -0.7
1,968,281 + PS417_09040 0.39 -0.3
1,968,452 + PS417_09040 0.55 -1.0
1,968,452 + PS417_09040 0.55 -0.4
1,968,453 - PS417_09040 0.55 -0.6
1,968,455 + PS417_09040 0.55 +0.4
1,968,671 + PS417_09040 0.76 +0.0
1,968,671 + PS417_09040 0.76 -2.2
1,968,672 - PS417_09040 0.76 -1.4
1,968,678 - PS417_09040 0.76 -1.0
1,968,863 + -0.0
1,968,863 + -0.1
1,969,327 - PS417_09045 0.32 -0.9
1,969,454 - PS417_09045 0.45 +0.0
1,969,454 - PS417_09045 0.45 -0.3
1,969,647 - PS417_09045 0.63 -1.2
1,969,777 + PS417_09045 0.76 +0.8

Or see this region's nucleotide sequence