Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09030 and PS417_09035 are separated by 102 nucleotides PS417_09035 and PS417_09040 are separated by 72 nucleotides PS417_09040 and PS417_09045 are separated by 64 nucleotides
PS417_09030: PS417_09030 - alpha/beta hydrolase, at 1,966,019 to 1,966,873
_09030
PS417_09035: PS417_09035 - hypothetical protein, at 1,966,976 to 1,967,794
_09035
PS417_09040: PS417_09040 - hypothetical protein, at 1,967,867 to 1,968,928
_09040
PS417_09045: PS417_09045 - histidine kinase, at 1,968,993 to 1,970,024
_09045
Position (kb)
1967
1968
1969 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1966.975 kb on + strand at 1966.975 kb on + strand at 1966.976 kb on - strand at 1966.997 kb on - strand at 1967.134 kb on + strand, within PS417_09035 at 1967.135 kb on - strand, within PS417_09035 at 1967.138 kb on + strand, within PS417_09035 at 1967.226 kb on - strand, within PS417_09035 at 1967.496 kb on + strand, within PS417_09035 at 1967.798 kb on + strand at 1967.830 kb on - strand at 1967.842 kb on + strand at 1967.842 kb on + strand at 1967.864 kb on + strand at 1967.864 kb on + strand at 1967.865 kb on - strand at 1967.865 kb on - strand at 1967.875 kb on + strand at 1968.182 kb on - strand, within PS417_09040 at 1968.281 kb on + strand, within PS417_09040 at 1968.452 kb on + strand, within PS417_09040 at 1968.452 kb on + strand, within PS417_09040 at 1968.453 kb on - strand, within PS417_09040 at 1968.455 kb on + strand, within PS417_09040 at 1968.671 kb on + strand, within PS417_09040 at 1968.671 kb on + strand, within PS417_09040 at 1968.672 kb on - strand, within PS417_09040 at 1968.678 kb on - strand, within PS417_09040 at 1968.863 kb on + strand at 1968.863 kb on + strand at 1969.327 kb on - strand, within PS417_09045 at 1969.454 kb on - strand, within PS417_09045 at 1969.454 kb on - strand, within PS417_09045 at 1969.647 kb on - strand, within PS417_09045 at 1969.777 kb on + strand, within PS417_09045
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 1,966,975 + -0.3 1,966,975 + +0.0 1,966,976 - -1.1 1,966,997 - -0.5 1,967,134 + PS417_09035 0.19 +0.8 1,967,135 - PS417_09035 0.19 -0.4 1,967,138 + PS417_09035 0.20 -0.4 1,967,226 - PS417_09035 0.31 +1.2 1,967,496 + PS417_09035 0.63 -1.2 1,967,798 + -0.2 1,967,830 - -1.0 1,967,842 + +0.1 1,967,842 + +0.8 1,967,864 + -0.3 1,967,864 + -0.9 1,967,865 - -0.7 1,967,865 - +2.0 1,967,875 + -0.3 1,968,182 - PS417_09040 0.30 -0.7 1,968,281 + PS417_09040 0.39 -0.3 1,968,452 + PS417_09040 0.55 -1.0 1,968,452 + PS417_09040 0.55 -0.4 1,968,453 - PS417_09040 0.55 -0.6 1,968,455 + PS417_09040 0.55 +0.4 1,968,671 + PS417_09040 0.76 +0.0 1,968,671 + PS417_09040 0.76 -2.2 1,968,672 - PS417_09040 0.76 -1.4 1,968,678 - PS417_09040 0.76 -1.0 1,968,863 + -0.0 1,968,863 + -0.1 1,969,327 - PS417_09045 0.32 -0.9 1,969,454 - PS417_09045 0.45 +0.0 1,969,454 - PS417_09045 0.45 -0.3 1,969,647 - PS417_09045 0.63 -1.2 1,969,777 + PS417_09045 0.76 +0.8
Or see this region's nucleotide sequence