Strain Fitness in Pseudomonas simiae WCS417 around PS417_06165

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06160 and PS417_06165 are separated by 217 nucleotidesPS417_06165 and PS417_06170 are separated by 112 nucleotidesPS417_06170 and PS417_06175 overlap by 4 nucleotides PS417_06160: PS417_06160 - beta-(1-3)-glucosyl transferase, at 1,364,755 to 1,367,346 _06160 PS417_06165: PS417_06165 - thiamine biosynthesis protein ThiF, at 1,367,564 to 1,368,373 _06165 PS417_06170: PS417_06170 - Fe-S metabolism protein SufE, at 1,368,486 to 1,368,899 _06170 PS417_06175: PS417_06175 - cysteine sulfinate desulfinase, at 1,368,896 to 1,370,101 _06175 Position (kb) 1367 1368 1369Strain fitness (log2 ratio) -2 -1 0 1at 1366.593 kb on - strand, within PS417_06160at 1366.724 kb on + strand, within PS417_06160at 1366.724 kb on + strandat 1366.725 kb on - strand, within PS417_06160at 1366.751 kb on + strand, within PS417_06160at 1366.751 kb on + strand, within PS417_06160at 1366.752 kb on - strand, within PS417_06160at 1366.752 kb on - strand, within PS417_06160at 1366.752 kb on - strand, within PS417_06160at 1367.078 kb on + strand, within PS417_06160at 1367.214 kb on - strandat 1367.350 kb on + strandat 1367.351 kb on - strandat 1367.351 kb on - strandat 1367.415 kb on + strandat 1367.416 kb on - strandat 1367.438 kb on - strandat 1367.438 kb on - strandat 1367.464 kb on + strandat 1367.464 kb on + strandat 1367.465 kb on - strandat 1367.465 kb on - strandat 1367.465 kb on - strandat 1367.483 kb on + strandat 1367.484 kb on - strandat 1367.484 kb on - strandat 1367.484 kb on - strandat 1367.492 kb on + strandat 1367.493 kb on - strandat 1367.493 kb on - strandat 1367.493 kb on - strandat 1367.493 kb on - strandat 1367.493 kb on - strandat 1367.499 kb on - strandat 1367.527 kb on + strandat 1367.528 kb on - strandat 1367.528 kb on - strandat 1367.535 kb on - strandat 1367.556 kb on + strandat 1367.570 kb on - strandat 1367.606 kb on + strandat 1367.897 kb on + strand, within PS417_06165at 1367.898 kb on - strand, within PS417_06165at 1367.898 kb on - strand, within PS417_06165at 1368.062 kb on - strand, within PS417_06165at 1368.128 kb on - strand, within PS417_06165at 1368.340 kb on - strandat 1368.371 kb on + strandat 1368.378 kb on + strandat 1368.497 kb on + strandat 1368.907 kb on + strandat 1369.145 kb on + strand, within PS417_06175at 1369.329 kb on + strand, within PS417_06175

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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1,366,593 - PS417_06160 0.71 +0.0
1,366,724 + PS417_06160 0.76 +0.1
1,366,724 + -0.2
1,366,725 - PS417_06160 0.76 +0.7
1,366,751 + PS417_06160 0.77 -1.3
1,366,751 + PS417_06160 0.77 +0.4
1,366,752 - PS417_06160 0.77 -0.2
1,366,752 - PS417_06160 0.77 +0.0
1,366,752 - PS417_06160 0.77 -0.3
1,367,078 + PS417_06160 0.90 +1.7
1,367,214 - +0.6
1,367,350 + +0.5
1,367,351 - +0.5
1,367,351 - -0.1
1,367,415 + -0.9
1,367,416 - +0.3
1,367,438 - -0.8
1,367,438 - +0.4
1,367,464 + -0.6
1,367,464 + +0.1
1,367,465 - +0.1
1,367,465 - -0.0
1,367,465 - -0.4
1,367,483 + +1.2
1,367,484 - -0.2
1,367,484 - -1.8
1,367,484 - +0.3
1,367,492 + -0.5
1,367,493 - +0.3
1,367,493 - +0.6
1,367,493 - +0.1
1,367,493 - -0.6
1,367,493 - -0.1
1,367,499 - +0.4
1,367,527 + +0.7
1,367,528 - +1.2
1,367,528 - +0.7
1,367,535 - -0.8
1,367,556 + +0.4
1,367,570 - -0.7
1,367,606 + -0.6
1,367,897 + PS417_06165 0.41 -0.5
1,367,898 - PS417_06165 0.41 -1.3
1,367,898 - PS417_06165 0.41 -1.4
1,368,062 - PS417_06165 0.61 -1.3
1,368,128 - PS417_06165 0.70 -0.9
1,368,340 - +0.5
1,368,371 + -0.1
1,368,378 + -1.0
1,368,497 + +0.4
1,368,907 + -1.6
1,369,145 + PS417_06175 0.21 -0.2
1,369,329 + PS417_06175 0.36 -0.0

Or see this region's nucleotide sequence