Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06160 and PS417_06165 are separated by 217 nucleotides PS417_06165 and PS417_06170 are separated by 112 nucleotides PS417_06170 and PS417_06175 overlap by 4 nucleotides
PS417_06160: PS417_06160 - beta-(1-3)-glucosyl transferase, at 1,364,755 to 1,367,346
_06160
PS417_06165: PS417_06165 - thiamine biosynthesis protein ThiF, at 1,367,564 to 1,368,373
_06165
PS417_06170: PS417_06170 - Fe-S metabolism protein SufE, at 1,368,486 to 1,368,899
_06170
PS417_06175: PS417_06175 - cysteine sulfinate desulfinase, at 1,368,896 to 1,370,101
_06175
Position (kb)
1367
1368
1369 Strain fitness (log2 ratio)
-2
-1
0
1 at 1366.593 kb on - strand, within PS417_06160 at 1366.724 kb on + strand, within PS417_06160 at 1366.724 kb on + strand at 1366.725 kb on - strand, within PS417_06160 at 1366.751 kb on + strand, within PS417_06160 at 1366.751 kb on + strand, within PS417_06160 at 1366.752 kb on - strand, within PS417_06160 at 1366.752 kb on - strand, within PS417_06160 at 1366.752 kb on - strand, within PS417_06160 at 1367.078 kb on + strand, within PS417_06160 at 1367.214 kb on - strand at 1367.350 kb on + strand at 1367.351 kb on - strand at 1367.351 kb on - strand at 1367.415 kb on + strand at 1367.416 kb on - strand at 1367.438 kb on - strand at 1367.438 kb on - strand at 1367.464 kb on + strand at 1367.464 kb on + strand at 1367.465 kb on - strand at 1367.465 kb on - strand at 1367.465 kb on - strand at 1367.483 kb on + strand at 1367.484 kb on - strand at 1367.484 kb on - strand at 1367.484 kb on - strand at 1367.492 kb on + strand at 1367.493 kb on - strand at 1367.493 kb on - strand at 1367.493 kb on - strand at 1367.493 kb on - strand at 1367.493 kb on - strand at 1367.499 kb on - strand at 1367.527 kb on + strand at 1367.528 kb on - strand at 1367.528 kb on - strand at 1367.535 kb on - strand at 1367.556 kb on + strand at 1367.570 kb on - strand at 1367.606 kb on + strand at 1367.897 kb on + strand, within PS417_06165 at 1367.898 kb on - strand, within PS417_06165 at 1367.898 kb on - strand, within PS417_06165 at 1368.062 kb on - strand, within PS417_06165 at 1368.128 kb on - strand, within PS417_06165 at 1368.340 kb on - strand at 1368.371 kb on + strand at 1368.378 kb on + strand at 1368.497 kb on + strand at 1368.907 kb on + strand at 1369.145 kb on + strand, within PS417_06175 at 1369.329 kb on + strand, within PS417_06175
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 1,366,593 - PS417_06160 0.71 +0.0 1,366,724 + PS417_06160 0.76 +0.1 1,366,724 + -0.2 1,366,725 - PS417_06160 0.76 +0.7 1,366,751 + PS417_06160 0.77 -1.3 1,366,751 + PS417_06160 0.77 +0.4 1,366,752 - PS417_06160 0.77 -0.2 1,366,752 - PS417_06160 0.77 +0.0 1,366,752 - PS417_06160 0.77 -0.3 1,367,078 + PS417_06160 0.90 +1.7 1,367,214 - +0.6 1,367,350 + +0.5 1,367,351 - +0.5 1,367,351 - -0.1 1,367,415 + -0.9 1,367,416 - +0.3 1,367,438 - -0.8 1,367,438 - +0.4 1,367,464 + -0.6 1,367,464 + +0.1 1,367,465 - +0.1 1,367,465 - -0.0 1,367,465 - -0.4 1,367,483 + +1.2 1,367,484 - -0.2 1,367,484 - -1.8 1,367,484 - +0.3 1,367,492 + -0.5 1,367,493 - +0.3 1,367,493 - +0.6 1,367,493 - +0.1 1,367,493 - -0.6 1,367,493 - -0.1 1,367,499 - +0.4 1,367,527 + +0.7 1,367,528 - +1.2 1,367,528 - +0.7 1,367,535 - -0.8 1,367,556 + +0.4 1,367,570 - -0.7 1,367,606 + -0.6 1,367,897 + PS417_06165 0.41 -0.5 1,367,898 - PS417_06165 0.41 -1.3 1,367,898 - PS417_06165 0.41 -1.4 1,368,062 - PS417_06165 0.61 -1.3 1,368,128 - PS417_06165 0.70 -0.9 1,368,340 - +0.5 1,368,371 + -0.1 1,368,378 + -1.0 1,368,497 + +0.4 1,368,907 + -1.6 1,369,145 + PS417_06175 0.21 -0.2 1,369,329 + PS417_06175 0.36 -0.0
Or see this region's nucleotide sequence