Strain Fitness in Pseudomonas simiae WCS417 around PS417_00360

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00350 and PS417_00355 are separated by 51 nucleotidesPS417_00355 and PS417_00360 overlap by 1 nucleotidesPS417_00360 and PS417_00365 are separated by 265 nucleotides PS417_00350: PS417_00350 - methionine ABC transporter substrate-binding protein, at 67,698 to 68,468 _00350 PS417_00355: PS417_00355 - metal ABC transporter permease, at 68,520 to 69,194 _00355 PS417_00360: PS417_00360 - methionine ABC transporter ATP-binding protein, at 69,194 to 70,201 _00360 PS417_00365: PS417_00365 - hydroperoxidase, at 70,467 to 72,608 _00365 Position (kb) 69 70 71Strain fitness (log2 ratio) -1 0 1 2 3at 68.286 kb on + strand, within PS417_00350at 68.286 kb on + strand, within PS417_00350at 68.695 kb on + strand, within PS417_00355at 68.696 kb on - strand, within PS417_00355at 68.696 kb on - strand, within PS417_00355at 68.709 kb on - strand, within PS417_00355at 69.090 kb on + strand, within PS417_00355at 69.196 kb on - strandat 70.178 kb on - strandat 70.204 kb on - strandat 70.204 kb on - strandat 70.260 kb on + strandat 70.372 kb on - strandat 70.372 kb on - strandat 70.375 kb on + strandat 70.375 kb on + strandat 70.376 kb on - strandat 70.376 kb on - strandat 70.376 kb on - strandat 70.376 kb on - strandat 70.376 kb on - strandat 70.376 kb on - strandat 70.376 kb on - strandat 70.376 kb on - strandat 70.452 kb on - strandat 70.452 kb on - strandat 70.768 kb on - strand, within PS417_00365at 70.780 kb on - strand, within PS417_00365at 70.832 kb on + strand, within PS417_00365at 70.890 kb on - strand, within PS417_00365at 70.920 kb on - strand, within PS417_00365at 71.184 kb on - strand, within PS417_00365at 71.184 kb on - strand, within PS417_00365

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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68,286 + PS417_00350 0.76 -0.1
68,286 + PS417_00350 0.76 -0.4
68,695 + PS417_00355 0.26 +1.2
68,696 - PS417_00355 0.26 -1.3
68,696 - PS417_00355 0.26 +0.7
68,709 - PS417_00355 0.28 +0.1
69,090 + PS417_00355 0.84 -0.8
69,196 - -0.6
70,178 - +0.1
70,204 - +0.5
70,204 - -0.3
70,260 + +2.9
70,372 - +0.2
70,372 - +1.2
70,375 + -0.9
70,375 + +1.1
70,376 - -1.2
70,376 - -0.4
70,376 - -0.7
70,376 - -0.2
70,376 - -0.6
70,376 - -0.5
70,376 - +0.5
70,376 - -0.1
70,452 - -0.5
70,452 - -1.0
70,768 - PS417_00365 0.14 -0.8
70,780 - PS417_00365 0.15 +0.2
70,832 + PS417_00365 0.17 -1.1
70,890 - PS417_00365 0.20 +1.2
70,920 - PS417_00365 0.21 +0.4
71,184 - PS417_00365 0.33 +0.2
71,184 - PS417_00365 0.33 -0.7

Or see this region's nucleotide sequence