Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_28215 and PS417_28220 are separated by 196 nucleotides PS417_28220 and PS417_28225 overlap by 23 nucleotides PS417_28225 and PS417_28230 are separated by 17 nucleotides
PS417_28215: PS417_28215 - pyruvate carboxylase subunit A, at 6,091,754 to 6,093,169
_28215
PS417_28220: PS417_28220 - LysR family transcriptional regulator, at 6,093,366 to 6,094,340
_28220
PS417_28225: PS417_28225 - hypothetical protein, at 6,094,318 to 6,094,611
_28225
PS417_28230: PS417_28230 - transcriptional regulator, at 6,094,629 to 6,095,495
_28230
Position (kb)
6093
6094
6095 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 6093.387 kb on - strand at 6093.439 kb on - strand at 6093.439 kb on - strand at 6093.949 kb on - strand, within PS417_28220 at 6093.949 kb on - strand, within PS417_28220 at 6094.075 kb on + strand, within PS417_28220 at 6094.559 kb on + strand, within PS417_28225 at 6094.795 kb on + strand, within PS417_28230 at 6094.795 kb on + strand at 6094.796 kb on - strand, within PS417_28230 at 6094.796 kb on - strand, within PS417_28230 at 6095.095 kb on + strand, within PS417_28230 at 6095.096 kb on - strand, within PS417_28230 at 6095.215 kb on + strand, within PS417_28230 at 6095.216 kb on - strand, within PS417_28230
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 6,093,387 - -3.8 6,093,439 - -3.4 6,093,439 - -4.9 6,093,949 - PS417_28220 0.60 -3.6 6,093,949 - PS417_28220 0.60 -4.1 6,094,075 + PS417_28220 0.73 -3.2 6,094,559 + PS417_28225 0.82 +1.1 6,094,795 + PS417_28230 0.19 -1.3 6,094,795 + -1.0 6,094,796 - PS417_28230 0.19 +0.8 6,094,796 - PS417_28230 0.19 -1.8 6,095,095 + PS417_28230 0.54 +1.8 6,095,096 - PS417_28230 0.54 -1.5 6,095,215 + PS417_28230 0.68 -0.3 6,095,216 - PS417_28230 0.68 -1.2
Or see this region's nucleotide sequence