Strain Fitness in Pseudomonas simiae WCS417 around PS417_02620

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_02610 and PS417_02615 overlap by 1 nucleotidesPS417_02615 and PS417_02620 are separated by 46 nucleotidesPS417_02620 and PS417_02625 are separated by 332 nucleotidesPS417_02625 and PS417_02630 are separated by 136 nucleotides PS417_02610: PS417_02610 - hypothetical protein, at 596,757 to 599,243 _02610 PS417_02615: PS417_02615 - transglutaminase, at 599,243 to 600,133 _02615 PS417_02620: PS417_02620 - hypothetical protein, at 600,180 to 600,362 _02620 PS417_02625: PS417_02625 - azurin, at 600,695 to 601,141 _02625 PS417_02630: PS417_02630 - NAD synthetase, at 601,278 to 602,105 _02630 Position (kb) 600 601Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 599.285 kb on + strandat 599.286 kb on - strandat 599.286 kb on - strandat 599.428 kb on + strandat 599.497 kb on - strand, within PS417_02615at 599.579 kb on - strand, within PS417_02615at 599.628 kb on - strand, within PS417_02615at 599.704 kb on - strand, within PS417_02615at 599.867 kb on + strand, within PS417_02615at 599.867 kb on + strandat 599.868 kb on - strand, within PS417_02615at 599.868 kb on - strand, within PS417_02615at 599.869 kb on + strand, within PS417_02615at 599.870 kb on - strand, within PS417_02615at 600.072 kb on + strandat 600.347 kb on - strandat 600.347 kb on - strandat 600.350 kb on + strandat 600.350 kb on + strandat 600.351 kb on - strandat 600.351 kb on - strandat 600.375 kb on - strandat 600.424 kb on + strandat 600.467 kb on - strandat 600.539 kb on + strandat 600.553 kb on + strandat 600.554 kb on - strandat 600.554 kb on - strandat 600.554 kb on - strandat 600.565 kb on + strandat 600.565 kb on + strandat 600.566 kb on - strandat 600.566 kb on - strandat 600.625 kb on - strandat 601.077 kb on - strandat 601.139 kb on + strandat 601.139 kb on + strandat 601.140 kb on - strandat 601.334 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
remove
599,285 + -0.5
599,286 - -1.1
599,286 - +0.2
599,428 + +2.8
599,497 - PS417_02615 0.29 -0.4
599,579 - PS417_02615 0.38 -1.2
599,628 - PS417_02615 0.43 -1.7
599,704 - PS417_02615 0.52 +1.8
599,867 + PS417_02615 0.70 -1.7
599,867 + -0.4
599,868 - PS417_02615 0.70 +0.9
599,868 - PS417_02615 0.70 -1.7
599,869 + PS417_02615 0.70 -2.9
599,870 - PS417_02615 0.70 -1.0
600,072 + -0.4
600,347 - +0.1
600,347 - -1.1
600,350 + +0.3
600,350 + +1.5
600,351 - -0.6
600,351 - -0.0
600,375 - +0.6
600,424 + +0.7
600,467 - -0.9
600,539 + -0.7
600,553 + +0.1
600,554 - +0.1
600,554 - -1.7
600,554 - +0.4
600,565 + -0.7
600,565 + -0.4
600,566 - -1.7
600,566 - -1.6
600,625 - +0.6
601,077 - +1.2
601,139 + -0.2
601,139 + +0.3
601,140 - -0.0
601,334 + -0.9

Or see this region's nucleotide sequence