Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24585 and PS417_24590 are separated by 129 nucleotides PS417_24590 and PS417_24595 are separated by 100 nucleotides
PS417_24585: PS417_24585 - AMP nucleosidase, at 5,333,188 to 5,334,651
_24585
PS417_24590: PS417_24590 - acyl-CoA dehydrogenase, at 5,334,781 to 5,336,433
_24590
PS417_24595: PS417_24595 - histidine kinase, at 5,336,534 to 5,338,924
_24595
Position (kb) 5334
5335
5336
5337 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5334.020 kb on + strand, within PS417_24585 at 5334.021 kb on - strand, within PS417_24585 at 5334.021 kb on - strand, within PS417_24585 at 5334.029 kb on + strand, within PS417_24585 at 5334.030 kb on - strand, within PS417_24585 at 5334.080 kb on + strand, within PS417_24585 at 5334.080 kb on + strand, within PS417_24585 at 5334.164 kb on + strand, within PS417_24585 at 5334.165 kb on - strand, within PS417_24585 at 5334.282 kb on - strand, within PS417_24585 at 5334.368 kb on + strand, within PS417_24585 at 5334.369 kb on - strand, within PS417_24585 at 5334.369 kb on - strand, within PS417_24585 at 5334.372 kb on + strand, within PS417_24585 at 5334.372 kb on + strand, within PS417_24585 at 5334.373 kb on - strand, within PS417_24585 at 5334.408 kb on - strand, within PS417_24585 at 5334.435 kb on - strand, within PS417_24585 at 5334.473 kb on + strand, within PS417_24585 at 5334.473 kb on + strand, within PS417_24585 at 5334.473 kb on + strand, within PS417_24585 at 5334.545 kb on + strand at 5334.545 kb on + strand at 5334.685 kb on + strand at 5334.685 kb on + strand at 5334.848 kb on + strand at 5334.849 kb on - strand at 5335.271 kb on + strand, within PS417_24590 at 5335.661 kb on + strand, within PS417_24590 at 5335.661 kb on + strand, within PS417_24590 at 5335.796 kb on + strand, within PS417_24590 at 5335.938 kb on - strand, within PS417_24590 at 5336.064 kb on - strand, within PS417_24590 at 5336.201 kb on + strand, within PS417_24590 at 5336.360 kb on + strand at 5336.526 kb on + strand at 5336.526 kb on + strand at 5336.701 kb on + strand at 5336.701 kb on + strand at 5336.701 kb on + strand at 5336.793 kb on - strand, within PS417_24595 at 5337.111 kb on + strand, within PS417_24595 at 5337.392 kb on - strand, within PS417_24595
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,334,020 + PS417_24585 0.57 -2.2 5,334,021 - PS417_24585 0.57 +1.1 5,334,021 - PS417_24585 0.57 -0.1 5,334,029 + PS417_24585 0.57 +0.0 5,334,030 - PS417_24585 0.58 -0.8 5,334,080 + PS417_24585 0.61 +0.7 5,334,080 + PS417_24585 0.61 -0.4 5,334,164 + PS417_24585 0.67 -3.1 5,334,165 - PS417_24585 0.67 -1.8 5,334,282 - PS417_24585 0.75 -0.3 5,334,368 + PS417_24585 0.81 +1.3 5,334,369 - PS417_24585 0.81 +0.2 5,334,369 - PS417_24585 0.81 +0.8 5,334,372 + PS417_24585 0.81 -0.7 5,334,372 + PS417_24585 0.81 -0.1 5,334,373 - PS417_24585 0.81 -1.9 5,334,408 - PS417_24585 0.83 -0.6 5,334,435 - PS417_24585 0.85 -0.4 5,334,473 + PS417_24585 0.88 -0.1 5,334,473 + PS417_24585 0.88 -1.5 5,334,473 + PS417_24585 0.88 -0.7 5,334,545 + -2.5 5,334,545 + -1.9 5,334,685 + +0.8 5,334,685 + -1.7 5,334,848 + +1.7 5,334,849 - +0.1 5,335,271 + PS417_24590 0.30 +2.1 5,335,661 + PS417_24590 0.53 -1.3 5,335,661 + PS417_24590 0.53 +0.2 5,335,796 + PS417_24590 0.61 +0.3 5,335,938 - PS417_24590 0.70 +0.2 5,336,064 - PS417_24590 0.78 -1.8 5,336,201 + PS417_24590 0.86 +0.2 5,336,360 + +0.6 5,336,526 + +0.3 5,336,526 + +1.7 5,336,701 + -0.5 5,336,701 + +1.2 5,336,701 + -1.3 5,336,793 - PS417_24595 0.11 +0.9 5,337,111 + PS417_24595 0.24 +0.2 5,337,392 - PS417_24595 0.36 -0.1
Or see this region's nucleotide sequence