Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24570 and PS417_24575 are separated by 202 nucleotides PS417_24575 and PS417_24580 overlap by 6 nucleotides PS417_24580 and PS417_24585 are separated by 71 nucleotides
PS417_24570: PS417_24570 - AsnC family transcriptional regulator, at 5,331,595 to 5,332,074
_24570
PS417_24575: PS417_24575 - hypothetical protein, at 5,332,277 to 5,332,486
_24575
PS417_24580: PS417_24580 - pseudouridine synthase, at 5,332,481 to 5,333,116
_24580
PS417_24585: PS417_24585 - AMP nucleosidase, at 5,333,188 to 5,334,651
_24585
Position (kb) 5332
5333
5334 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 5331.481 kb on + strand at 5331.739 kb on + strand, within PS417_24570 at 5331.739 kb on + strand, within PS417_24570 at 5331.739 kb on + strand, within PS417_24570 at 5331.739 kb on + strand, within PS417_24570 at 5331.740 kb on - strand, within PS417_24570 at 5331.740 kb on - strand, within PS417_24570 at 5331.800 kb on - strand, within PS417_24570 at 5332.089 kb on + strand at 5332.089 kb on + strand at 5332.089 kb on + strand at 5332.090 kb on - strand at 5332.090 kb on - strand at 5332.090 kb on - strand at 5332.143 kb on + strand at 5332.143 kb on + strand at 5332.144 kb on - strand at 5332.144 kb on - strand at 5332.144 kb on - strand at 5332.144 kb on - strand at 5332.235 kb on + strand at 5332.237 kb on + strand at 5332.349 kb on - strand, within PS417_24575 at 5332.483 kb on - strand at 5332.483 kb on - strand at 5332.484 kb on + strand at 5332.485 kb on - strand at 5332.485 kb on - strand at 5332.485 kb on - strand at 5332.601 kb on + strand, within PS417_24580 at 5332.613 kb on - strand, within PS417_24580 at 5332.644 kb on + strand, within PS417_24580 at 5332.653 kb on - strand, within PS417_24580 at 5333.002 kb on + strand, within PS417_24580 at 5333.132 kb on - strand at 5333.169 kb on - strand at 5333.309 kb on + strand at 5333.309 kb on + strand at 5333.310 kb on - strand at 5333.510 kb on + strand, within PS417_24585 at 5333.511 kb on - strand, within PS417_24585 at 5333.511 kb on - strand, within PS417_24585 at 5333.602 kb on + strand, within PS417_24585 at 5333.602 kb on + strand, within PS417_24585 at 5333.603 kb on - strand, within PS417_24585 at 5333.603 kb on - strand, within PS417_24585 at 5333.672 kb on + strand, within PS417_24585 at 5333.672 kb on + strand, within PS417_24585 at 5333.672 kb on + strand, within PS417_24585 at 5333.672 kb on + strand, within PS417_24585 at 5333.672 kb on + strand, within PS417_24585 at 5333.672 kb on + strand, within PS417_24585 at 5333.673 kb on - strand, within PS417_24585 at 5333.673 kb on - strand, within PS417_24585 at 5333.673 kb on - strand, within PS417_24585 at 5333.673 kb on - strand, within PS417_24585 at 5333.673 kb on - strand, within PS417_24585 at 5334.020 kb on + strand, within PS417_24585 at 5334.021 kb on - strand, within PS417_24585 at 5334.021 kb on - strand, within PS417_24585 at 5334.029 kb on + strand, within PS417_24585 at 5334.030 kb on - strand, within PS417_24585 at 5334.080 kb on + strand, within PS417_24585 at 5334.080 kb on + strand, within PS417_24585
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,331,481 + -2.9 5,331,739 + PS417_24570 0.30 -0.2 5,331,739 + PS417_24570 0.30 -1.3 5,331,739 + PS417_24570 0.30 +0.6 5,331,739 + PS417_24570 0.30 -1.0 5,331,740 - PS417_24570 0.30 +1.8 5,331,740 - PS417_24570 0.30 -0.4 5,331,800 - PS417_24570 0.43 -0.8 5,332,089 + -0.7 5,332,089 + -0.6 5,332,089 + +0.5 5,332,090 - -0.6 5,332,090 - -0.1 5,332,090 - -6.7 5,332,143 + +0.5 5,332,143 + +0.9 5,332,144 - +0.8 5,332,144 - +1.3 5,332,144 - -2.6 5,332,144 - -2.8 5,332,235 + -0.7 5,332,237 + +0.1 5,332,349 - PS417_24575 0.34 -0.1 5,332,483 - +0.0 5,332,483 - -1.0 5,332,484 + +0.2 5,332,485 - +0.8 5,332,485 - -0.5 5,332,485 - -0.4 5,332,601 + PS417_24580 0.19 -0.9 5,332,613 - PS417_24580 0.21 -2.0 5,332,644 + PS417_24580 0.26 +0.4 5,332,653 - PS417_24580 0.27 -0.5 5,333,002 + PS417_24580 0.82 -1.6 5,333,132 - -2.3 5,333,169 - +1.6 5,333,309 + -0.2 5,333,309 + +1.0 5,333,310 - +0.3 5,333,510 + PS417_24585 0.22 +0.9 5,333,511 - PS417_24585 0.22 +0.5 5,333,511 - PS417_24585 0.22 +0.7 5,333,602 + PS417_24585 0.28 -0.6 5,333,602 + PS417_24585 0.28 -1.0 5,333,603 - PS417_24585 0.28 -0.2 5,333,603 - PS417_24585 0.28 -1.6 5,333,672 + PS417_24585 0.33 -1.0 5,333,672 + PS417_24585 0.33 -1.7 5,333,672 + PS417_24585 0.33 -2.4 5,333,672 + PS417_24585 0.33 +1.1 5,333,672 + PS417_24585 0.33 -0.7 5,333,672 + PS417_24585 0.33 -0.1 5,333,673 - PS417_24585 0.33 +0.9 5,333,673 - PS417_24585 0.33 +0.1 5,333,673 - PS417_24585 0.33 -1.5 5,333,673 - PS417_24585 0.33 -1.0 5,333,673 - PS417_24585 0.33 -2.0 5,334,020 + PS417_24585 0.57 -2.2 5,334,021 - PS417_24585 0.57 +1.1 5,334,021 - PS417_24585 0.57 -0.1 5,334,029 + PS417_24585 0.57 +0.0 5,334,030 - PS417_24585 0.58 -0.8 5,334,080 + PS417_24585 0.61 +0.7 5,334,080 + PS417_24585 0.61 -0.4
Or see this region's nucleotide sequence