Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24470 and PS417_24475 are separated by 48 nucleotides PS417_24475 and PS417_24480 overlap by 4 nucleotides PS417_24480 and PS417_24485 are separated by 38 nucleotides PS417_24485 and PS417_24490 are separated by 75 nucleotides
PS417_24470: PS417_24470 - hypothetical protein, at 5,311,962 to 5,312,933
_24470
PS417_24475: PS417_24475 - HAD family hydrolase, at 5,312,982 to 5,313,569
_24475
PS417_24480: PS417_24480 - palmitoyl-CoA hydrolase, at 5,313,566 to 5,314,435
_24480
PS417_24485: PS417_24485 - GNAT family acetyltransferase, at 5,314,474 to 5,315,043
_24485
PS417_24490: PS417_24490 - hypothetical protein, at 5,315,119 to 5,316,039
_24490
Position (kb) 5313
5314
5315 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5312.685 kb on + strand, within PS417_24470 at 5312.685 kb on + strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.707 kb on - strand, within PS417_24470 at 5312.707 kb on - strand, within PS417_24470 at 5312.808 kb on + strand, within PS417_24470 at 5312.808 kb on + strand at 5312.809 kb on - strand, within PS417_24470 at 5312.809 kb on - strand, within PS417_24470 at 5312.817 kb on + strand, within PS417_24470 at 5312.897 kb on + strand at 5312.897 kb on + strand at 5312.898 kb on - strand at 5312.920 kb on + strand at 5312.921 kb on - strand at 5312.921 kb on - strand at 5312.921 kb on - strand at 5312.983 kb on + strand at 5312.983 kb on + strand at 5312.983 kb on + strand at 5313.552 kb on + strand at 5313.553 kb on - strand at 5313.639 kb on + strand at 5313.640 kb on - strand at 5313.697 kb on - strand, within PS417_24480 at 5313.766 kb on + strand, within PS417_24480 at 5313.767 kb on - strand, within PS417_24480 at 5313.847 kb on - strand, within PS417_24480 at 5313.847 kb on - strand at 5313.900 kb on + strand, within PS417_24480 at 5313.901 kb on - strand, within PS417_24480 at 5313.901 kb on - strand, within PS417_24480 at 5313.901 kb on - strand, within PS417_24480 at 5313.995 kb on - strand, within PS417_24480 at 5313.995 kb on - strand, within PS417_24480 at 5314.108 kb on - strand, within PS417_24480 at 5314.210 kb on - strand, within PS417_24480 at 5314.249 kb on - strand, within PS417_24480 at 5314.249 kb on - strand, within PS417_24480 at 5314.283 kb on + strand, within PS417_24480 at 5314.283 kb on + strand, within PS417_24480 at 5314.283 kb on + strand, within PS417_24480 at 5314.284 kb on - strand, within PS417_24480 at 5314.284 kb on - strand, within PS417_24480 at 5314.424 kb on + strand at 5314.424 kb on + strand at 5314.436 kb on - strand at 5314.436 kb on - strand at 5314.436 kb on - strand at 5314.454 kb on + strand at 5315.074 kb on + strand at 5315.074 kb on + strand at 5315.075 kb on - strand at 5315.086 kb on - strand at 5315.149 kb on + strand at 5315.149 kb on + strand at 5315.150 kb on - strand at 5315.150 kb on - strand at 5315.150 kb on - strand at 5315.150 kb on - strand at 5315.318 kb on - strand, within PS417_24490 at 5315.396 kb on + strand, within PS417_24490
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,312,685 + PS417_24470 0.74 +0.3 5,312,685 + PS417_24470 0.74 -1.1 5,312,686 - PS417_24470 0.74 +0.4 5,312,686 - PS417_24470 0.74 +0.1 5,312,686 - PS417_24470 0.74 +0.4 5,312,686 - PS417_24470 0.74 -0.1 5,312,686 - PS417_24470 0.74 -1.9 5,312,686 - PS417_24470 0.74 -0.3 5,312,686 - PS417_24470 0.74 -1.1 5,312,686 - PS417_24470 0.74 -0.3 5,312,686 - PS417_24470 0.74 -0.2 5,312,707 - PS417_24470 0.77 -0.5 5,312,707 - PS417_24470 0.77 -1.9 5,312,808 + PS417_24470 0.87 -1.2 5,312,808 + -0.7 5,312,809 - PS417_24470 0.87 -1.3 5,312,809 - PS417_24470 0.87 -0.0 5,312,817 + PS417_24470 0.88 +1.3 5,312,897 + +0.2 5,312,897 + -2.2 5,312,898 - -1.1 5,312,920 + -1.6 5,312,921 - +0.0 5,312,921 - +1.8 5,312,921 - +0.8 5,312,983 + -0.4 5,312,983 + +1.4 5,312,983 + -0.1 5,313,552 + +0.2 5,313,553 - +1.5 5,313,639 + -1.3 5,313,640 - +0.9 5,313,697 - PS417_24480 0.15 -2.4 5,313,766 + PS417_24480 0.23 -0.3 5,313,767 - PS417_24480 0.23 -1.5 5,313,847 - PS417_24480 0.32 -0.4 5,313,847 - -1.0 5,313,900 + PS417_24480 0.38 -2.8 5,313,901 - PS417_24480 0.39 +0.2 5,313,901 - PS417_24480 0.39 +1.1 5,313,901 - PS417_24480 0.39 +0.3 5,313,995 - PS417_24480 0.49 +0.4 5,313,995 - PS417_24480 0.49 +0.9 5,314,108 - PS417_24480 0.62 -0.4 5,314,210 - PS417_24480 0.74 +0.0 5,314,249 - PS417_24480 0.79 -1.1 5,314,249 - PS417_24480 0.79 +0.9 5,314,283 + PS417_24480 0.82 -1.1 5,314,283 + PS417_24480 0.82 +0.4 5,314,283 + PS417_24480 0.82 -0.3 5,314,284 - PS417_24480 0.83 -0.1 5,314,284 - PS417_24480 0.83 -1.9 5,314,424 + +0.6 5,314,424 + -0.9 5,314,436 - +1.8 5,314,436 - -0.6 5,314,436 - -0.6 5,314,454 + -0.4 5,315,074 + -0.2 5,315,074 + -0.1 5,315,075 - -2.1 5,315,086 - +0.6 5,315,149 + +0.6 5,315,149 + -0.7 5,315,150 - -0.0 5,315,150 - +1.3 5,315,150 - -1.8 5,315,150 - -2.0 5,315,318 - PS417_24490 0.22 +1.0 5,315,396 + PS417_24490 0.30 +0.8
Or see this region's nucleotide sequence