Strain Fitness in Pseudomonas simiae WCS417 around PS417_18565

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18555 and PS417_18560 are separated by 244 nucleotidesPS417_18560 and PS417_18565 are separated by 64 nucleotidesPS417_18565 and PS417_18570 are separated by 141 nucleotides PS417_18555: PS417_18555 - acetyl-CoA carboxylase subunit beta, at 4,028,739 to 4,029,659 _18555 PS417_18560: PS417_18560 - N-(5'-phosphoribosyl)anthranilate isomerase, at 4,029,904 to 4,030,536 _18560 PS417_18565: PS417_18565 - pseudouridine synthase, at 4,030,601 to 4,031,425 _18565 PS417_18570: PS417_18570 - peptidoglycan-binding protein, at 4,031,567 to 4,034,128 _18570 Position (kb) 4030 4031 4032Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 4029.724 kb on - strandat 4029.865 kb on - strandat 4029.875 kb on - strandat 4029.955 kb on - strandat 4030.010 kb on + strand, within PS417_18560at 4030.148 kb on + strand, within PS417_18560at 4030.148 kb on + strand, within PS417_18560at 4030.148 kb on + strand, within PS417_18560at 4030.148 kb on + strand, within PS417_18560at 4030.149 kb on - strand, within PS417_18560at 4030.149 kb on - strand, within PS417_18560at 4030.439 kb on + strand, within PS417_18560at 4030.439 kb on + strand, within PS417_18560at 4030.440 kb on - strand, within PS417_18560at 4030.440 kb on - strand, within PS417_18560at 4030.440 kb on - strand, within PS417_18560at 4030.495 kb on + strandat 4030.826 kb on - strand, within PS417_18565at 4031.441 kb on - strandat 4031.444 kb on + strandat 4031.444 kb on + strandat 4031.445 kb on - strandat 4031.445 kb on - strandat 4031.446 kb on + strandat 4031.679 kb on + strandat 4031.679 kb on + strandat 4031.680 kb on - strandat 4031.680 kb on - strandat 4031.680 kb on - strandat 4031.680 kb on - strandat 4032.258 kb on + strand, within PS417_18570

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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4,029,724 - +1.0
4,029,865 - +0.5
4,029,875 - +0.0
4,029,955 - -2.8
4,030,010 + PS417_18560 0.17 -3.9
4,030,148 + PS417_18560 0.39 -4.1
4,030,148 + PS417_18560 0.39 -0.4
4,030,148 + PS417_18560 0.39 -6.2
4,030,148 + PS417_18560 0.39 +0.6
4,030,149 - PS417_18560 0.39 -2.5
4,030,149 - PS417_18560 0.39 -5.9
4,030,439 + PS417_18560 0.85 -2.4
4,030,439 + PS417_18560 0.85 -3.9
4,030,440 - PS417_18560 0.85 -6.4
4,030,440 - PS417_18560 0.85 -3.4
4,030,440 - PS417_18560 0.85 -5.9
4,030,495 + -1.0
4,030,826 - PS417_18565 0.27 -0.3
4,031,441 - -1.0
4,031,444 + +0.1
4,031,444 + -1.2
4,031,445 - -0.5
4,031,445 - -1.0
4,031,446 + -1.9
4,031,679 + -2.0
4,031,679 + -2.0
4,031,680 - -2.8
4,031,680 - -2.3
4,031,680 - -1.8
4,031,680 - -2.9
4,032,258 + PS417_18570 0.27 -3.9

Or see this region's nucleotide sequence