Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17005 and PS417_17010 are separated by 681 nucleotides PS417_17010 and PS417_17015 are separated by 151 nucleotides
PS417_17005: PS417_17005 - hydroxymethylglutaryl-CoA lyase, at 3,714,205 to 3,715,104
_17005
PS417_17010: PS417_17010 - AMP-binding protein, at 3,715,786 to 3,717,420
_17010
PS417_17015: PS417_17015 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) , at 3,717,572 to 3,718,735
_17015
Position (kb)
3715
3716
3717
3718 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3715.107 kb on - strand at 3715.163 kb on + strand at 3715.163 kb on + strand at 3715.163 kb on + strand at 3715.163 kb on + strand at 3715.163 kb on + strand at 3715.164 kb on - strand at 3715.173 kb on + strand at 3715.320 kb on + strand at 3715.428 kb on + strand at 3715.428 kb on + strand at 3715.437 kb on + strand at 3715.437 kb on + strand at 3715.564 kb on + strand at 3715.565 kb on - strand at 3715.608 kb on + strand at 3715.787 kb on + strand at 3715.787 kb on + strand at 3715.788 kb on - strand at 3715.788 kb on - strand at 3715.810 kb on + strand at 3716.135 kb on + strand, within PS417_17010 at 3716.645 kb on + strand, within PS417_17010 at 3716.709 kb on - strand, within PS417_17010 at 3716.709 kb on - strand, within PS417_17010 at 3716.771 kb on + strand, within PS417_17010 at 3716.771 kb on + strand, within PS417_17010 at 3716.772 kb on - strand, within PS417_17010 at 3716.840 kb on + strand, within PS417_17010 at 3716.841 kb on - strand, within PS417_17010 at 3716.841 kb on - strand, within PS417_17010 at 3717.084 kb on - strand, within PS417_17010 at 3717.217 kb on - strand, within PS417_17010 at 3717.399 kb on - strand at 3717.456 kb on - strand at 3717.461 kb on + strand at 3717.558 kb on + strand at 3717.558 kb on + strand at 3717.915 kb on - strand, within PS417_17015 at 3718.082 kb on + strand, within PS417_17015 at 3718.376 kb on + strand, within PS417_17015
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,715,107 - -0.5 3,715,163 + -0.9 3,715,163 + -0.3 3,715,163 + -2.0 3,715,163 + +0.6 3,715,163 + -0.2 3,715,164 - -0.9 3,715,173 + -0.0 3,715,320 + -0.6 3,715,428 + -0.0 3,715,428 + -1.1 3,715,437 + -0.1 3,715,437 + -0.5 3,715,564 + -0.2 3,715,565 - -0.4 3,715,608 + -1.5 3,715,787 + -0.7 3,715,787 + -1.6 3,715,788 - +0.3 3,715,788 - -1.7 3,715,810 + +0.3 3,716,135 + PS417_17010 0.21 +0.2 3,716,645 + PS417_17010 0.53 +0.6 3,716,709 - PS417_17010 0.56 -3.1 3,716,709 - PS417_17010 0.56 +0.2 3,716,771 + PS417_17010 0.60 -0.9 3,716,771 + PS417_17010 0.60 -0.4 3,716,772 - PS417_17010 0.60 -0.4 3,716,840 + PS417_17010 0.64 -0.5 3,716,841 - PS417_17010 0.65 -0.2 3,716,841 - PS417_17010 0.65 +0.0 3,717,084 - PS417_17010 0.79 -1.0 3,717,217 - PS417_17010 0.88 -0.0 3,717,399 - +0.0 3,717,456 - -0.3 3,717,461 + -1.1 3,717,558 + -0.7 3,717,558 + -1.5 3,717,915 - PS417_17015 0.29 +0.7 3,718,082 + PS417_17015 0.44 -2.5 3,718,376 + PS417_17015 0.69 -1.7
Or see this region's nucleotide sequence