Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13595 and PS417_13600 are separated by 12 nucleotides PS417_13600 and PS417_13605 overlap by 4 nucleotides PS417_13605 and PS417_13610 overlap by 14 nucleotides PS417_13610 and PS417_13615 overlap by 4 nucleotides
PS417_13595: PS417_13595 - XRE family transcriptional regulator, at 2,994,488 to 2,995,150
_13595
PS417_13600: PS417_13600 - hypothetical protein, at 2,995,163 to 2,995,807
_13600
PS417_13605: PS417_13605 - short-chain dehydrogenase, at 2,995,804 to 2,996,613
_13605
PS417_13610: PS417_13610 - long-chain fatty acid--CoA ligase, at 2,996,600 to 2,997,274
_13610
PS417_13615: PS417_13615 - long-chain acyl-CoA synthetase, at 2,997,271 to 2,998,749
_13615
Position (kb)
2995
2996
2997 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2995.139 kb on + strand at 2995.139 kb on + strand at 2995.142 kb on + strand at 2995.142 kb on + strand at 2995.329 kb on + strand, within PS417_13600 at 2995.355 kb on - strand at 2995.434 kb on + strand, within PS417_13600 at 2995.434 kb on + strand, within PS417_13600 at 2995.455 kb on + strand, within PS417_13600 at 2995.689 kb on + strand, within PS417_13600 at 2995.689 kb on + strand, within PS417_13600 at 2995.689 kb on + strand, within PS417_13600 at 2995.940 kb on + strand, within PS417_13605 at 2996.090 kb on - strand, within PS417_13605 at 2996.165 kb on + strand, within PS417_13605 at 2996.198 kb on + strand, within PS417_13605 at 2996.198 kb on + strand, within PS417_13605 at 2996.198 kb on + strand, within PS417_13605 at 2996.199 kb on - strand, within PS417_13605 at 2996.199 kb on - strand, within PS417_13605 at 2996.323 kb on + strand, within PS417_13605 at 2996.323 kb on + strand, within PS417_13605 at 2996.658 kb on + strand at 2996.659 kb on - strand at 2996.784 kb on + strand, within PS417_13610 at 2996.922 kb on + strand, within PS417_13610 at 2996.923 kb on - strand, within PS417_13610 at 2996.923 kb on - strand, within PS417_13610 at 2996.929 kb on - strand, within PS417_13610 at 2996.929 kb on - strand, within PS417_13610 at 2996.978 kb on - strand, within PS417_13610 at 2996.978 kb on - strand, within PS417_13610 at 2997.142 kb on - strand, within PS417_13610
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,995,139 + -0.2 2,995,139 + +0.6 2,995,142 + -0.6 2,995,142 + -2.5 2,995,329 + PS417_13600 0.26 +1.2 2,995,355 - +1.6 2,995,434 + PS417_13600 0.42 -0.4 2,995,434 + PS417_13600 0.42 -1.2 2,995,455 + PS417_13600 0.45 +3.4 2,995,689 + PS417_13600 0.82 -0.0 2,995,689 + PS417_13600 0.82 -0.5 2,995,689 + PS417_13600 0.82 -0.3 2,995,940 + PS417_13605 0.17 -0.6 2,996,090 - PS417_13605 0.35 -0.2 2,996,165 + PS417_13605 0.45 +0.0 2,996,198 + PS417_13605 0.49 -0.9 2,996,198 + PS417_13605 0.49 -0.6 2,996,198 + PS417_13605 0.49 -0.1 2,996,199 - PS417_13605 0.49 -1.7 2,996,199 - PS417_13605 0.49 -0.8 2,996,323 + PS417_13605 0.64 +0.2 2,996,323 + PS417_13605 0.64 -2.6 2,996,658 + +0.5 2,996,659 - +0.2 2,996,784 + PS417_13610 0.27 -2.4 2,996,922 + PS417_13610 0.48 -0.2 2,996,923 - PS417_13610 0.48 -0.5 2,996,923 - PS417_13610 0.48 -0.9 2,996,929 - PS417_13610 0.49 +0.2 2,996,929 - PS417_13610 0.49 -2.6 2,996,978 - PS417_13610 0.56 -0.9 2,996,978 - PS417_13610 0.56 -2.7 2,997,142 - PS417_13610 0.80 +0.9
Or see this region's nucleotide sequence