Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11165 and PS417_11170 overlap by 4 nucleotides PS417_11170 and PS417_11175 overlap by 14 nucleotides
PS417_11165: PS417_11165 - omega amino acid--pyruvate aminotransferase, at 2,394,487 to 2,395,782
_11165
PS417_11170: PS417_11170 - aldehyde dehydrogenase, at 2,395,779 to 2,397,200
_11170
PS417_11175: PS417_11175 - AraC family transcriptional regulator, at 2,397,187 to 2,398,125
_11175
Position (kb)
2395
2396
2397
2398 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2395.163 kb on - strand, within PS417_11165 at 2395.418 kb on - strand, within PS417_11165 at 2396.136 kb on + strand, within PS417_11170 at 2396.136 kb on + strand, within PS417_11170 at 2396.136 kb on + strand, within PS417_11170 at 2396.136 kb on + strand, within PS417_11170 at 2396.137 kb on - strand, within PS417_11170 at 2396.137 kb on - strand, within PS417_11170 at 2396.137 kb on - strand, within PS417_11170 at 2396.148 kb on + strand, within PS417_11170 at 2396.149 kb on - strand, within PS417_11170 at 2396.841 kb on + strand, within PS417_11170 at 2396.842 kb on - strand, within PS417_11170 at 2396.992 kb on - strand, within PS417_11170 at 2397.137 kb on - strand at 2397.153 kb on + strand at 2397.154 kb on - strand at 2397.502 kb on + strand, within PS417_11175 at 2397.502 kb on + strand, within PS417_11175
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,395,163 - PS417_11165 0.52 -4.1 2,395,418 - PS417_11165 0.72 -0.9 2,396,136 + PS417_11170 0.25 -1.2 2,396,136 + PS417_11170 0.25 -3.2 2,396,136 + PS417_11170 0.25 +2.9 2,396,136 + PS417_11170 0.25 -0.3 2,396,137 - PS417_11170 0.25 -0.1 2,396,137 - PS417_11170 0.25 -0.3 2,396,137 - PS417_11170 0.25 -0.4 2,396,148 + PS417_11170 0.26 +0.4 2,396,149 - PS417_11170 0.26 -0.2 2,396,841 + PS417_11170 0.75 +0.1 2,396,842 - PS417_11170 0.75 +0.4 2,396,992 - PS417_11170 0.85 -2.4 2,397,137 - -0.7 2,397,153 + +1.1 2,397,154 - +0.5 2,397,502 + PS417_11175 0.34 -0.0 2,397,502 + PS417_11175 0.34 -0.4
Or see this region's nucleotide sequence