Strain Fitness in Pseudomonas simiae WCS417 around PS417_09775

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09770 and PS417_09775 are separated by 475 nucleotidesPS417_09775 and PS417_09780 are separated by 305 nucleotides PS417_09770: PS417_09770 - MFS transporter, at 2,116,938 to 2,118,089 _09770 PS417_09775: PS417_09775 - DeoR faimly transcriptional regulator, at 2,118,565 to 2,119,539 _09775 PS417_09780: PS417_09780 - type IV secretion protein Rhs, at 2,119,845 to 2,121,863 _09780 Position (kb) 2118 2119 2120Strain fitness (log2 ratio) -2 -1 0 1 2at 2117.723 kb on + strand, within PS417_09770at 2117.972 kb on - strandat 2118.114 kb on - strandat 2118.284 kb on - strandat 2118.329 kb on - strandat 2118.594 kb on + strandat 2118.594 kb on + strandat 2118.595 kb on - strandat 2118.599 kb on - strandat 2118.599 kb on - strandat 2118.599 kb on - strandat 2118.599 kb on - strandat 2118.714 kb on + strand, within PS417_09775at 2118.714 kb on + strand, within PS417_09775at 2118.714 kb on + strand, within PS417_09775at 2118.715 kb on - strand, within PS417_09775at 2118.715 kb on - strandat 2118.715 kb on - strand, within PS417_09775at 2118.947 kb on + strand, within PS417_09775at 2119.583 kb on + strandat 2119.584 kb on - strandat 2119.592 kb on + strandat 2119.593 kb on - strandat 2119.669 kb on + strandat 2119.688 kb on - strandat 2119.694 kb on - strandat 2119.743 kb on + strandat 2119.744 kb on - strandat 2119.780 kb on + strandat 2119.780 kb on + strandat 2119.781 kb on - strandat 2119.894 kb on + strandat 2119.964 kb on - strandat 2119.964 kb on - strandat 2119.964 kb on - strandat 2120.140 kb on - strand, within PS417_09780at 2120.292 kb on + strand, within PS417_09780at 2120.292 kb on + strand, within PS417_09780at 2120.433 kb on + strandat 2120.433 kb on + strand, within PS417_09780at 2120.434 kb on - strand, within PS417_09780at 2120.434 kb on - strand, within PS417_09780at 2120.436 kb on - strand, within PS417_09780

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,117,723 + PS417_09770 0.68 -0.8
2,117,972 - -0.7
2,118,114 - -0.2
2,118,284 - -0.1
2,118,329 - +0.3
2,118,594 + +0.2
2,118,594 + +0.6
2,118,595 - -0.3
2,118,599 - +0.0
2,118,599 - -0.8
2,118,599 - -1.4
2,118,599 - -0.5
2,118,714 + PS417_09775 0.15 -0.4
2,118,714 + PS417_09775 0.15 -1.3
2,118,714 + PS417_09775 0.15 -0.5
2,118,715 - PS417_09775 0.15 -2.7
2,118,715 - -0.1
2,118,715 - PS417_09775 0.15 -0.4
2,118,947 + PS417_09775 0.39 +0.1
2,119,583 + +0.2
2,119,584 - -0.7
2,119,592 + -1.3
2,119,593 - -0.9
2,119,669 + +0.9
2,119,688 - +2.0
2,119,694 - +0.2
2,119,743 + -0.1
2,119,744 - +1.1
2,119,780 + +0.4
2,119,780 + +1.0
2,119,781 - -1.3
2,119,894 + +0.0
2,119,964 - +0.7
2,119,964 - +0.3
2,119,964 - -0.5
2,120,140 - PS417_09780 0.15 +0.4
2,120,292 + PS417_09780 0.22 -0.4
2,120,292 + PS417_09780 0.22 -1.4
2,120,433 + +1.5
2,120,433 + PS417_09780 0.29 -0.0
2,120,434 - PS417_09780 0.29 -1.0
2,120,434 - PS417_09780 0.29 +1.2
2,120,436 - PS417_09780 0.29 +2.0

Or see this region's nucleotide sequence