Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_07900 and PS417_07905 are separated by 121 nucleotides PS417_07905 and PS417_07910 are separated by 315 nucleotides
PS417_07900: PS417_07900 - hypothetical protein, at 1,731,488 to 1,732,237
_07900
PS417_07905: PS417_07905 - hypothetical protein, at 1,732,359 to 1,732,856
_07905
PS417_07910: PS417_07910 - hypothetical protein, at 1,733,172 to 1,734,317
_07910
Position (kb)
1732
1733 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1731.421 kb on + strand at 1731.422 kb on - strand at 1731.431 kb on + strand at 1731.432 kb on - strand at 1731.484 kb on + strand at 1731.485 kb on - strand at 1731.509 kb on - strand at 1731.587 kb on + strand, within PS417_07900 at 1731.660 kb on - strand, within PS417_07900 at 1731.660 kb on - strand, within PS417_07900 at 1731.691 kb on - strand, within PS417_07900 at 1731.694 kb on + strand, within PS417_07900 at 1731.903 kb on - strand, within PS417_07900 at 1731.903 kb on - strand, within PS417_07900 at 1731.903 kb on - strand, within PS417_07900 at 1731.903 kb on - strand, within PS417_07900 at 1731.903 kb on - strand, within PS417_07900 at 1731.904 kb on + strand, within PS417_07900 at 1731.978 kb on - strand, within PS417_07900 at 1731.995 kb on - strand, within PS417_07900 at 1732.091 kb on + strand, within PS417_07900 at 1732.091 kb on + strand, within PS417_07900 at 1732.091 kb on + strand, within PS417_07900 at 1732.092 kb on - strand, within PS417_07900 at 1732.092 kb on - strand, within PS417_07900 at 1732.135 kb on - strand, within PS417_07900 at 1732.184 kb on - strand at 1732.184 kb on - strand at 1732.230 kb on - strand at 1732.287 kb on + strand at 1732.288 kb on - strand at 1732.309 kb on - strand at 1732.343 kb on + strand at 1732.359 kb on - strand at 1732.420 kb on - strand, within PS417_07905 at 1732.508 kb on + strand, within PS417_07905 at 1732.555 kb on + strand, within PS417_07905 at 1732.618 kb on + strand, within PS417_07905 at 1732.618 kb on + strand, within PS417_07905 at 1732.618 kb on + strand, within PS417_07905 at 1732.618 kb on + strand, within PS417_07905 at 1732.618 kb on + strand, within PS417_07905 at 1732.619 kb on - strand, within PS417_07905 at 1732.619 kb on - strand, within PS417_07905 at 1732.622 kb on + strand, within PS417_07905 at 1732.622 kb on + strand, within PS417_07905 at 1732.690 kb on - strand, within PS417_07905 at 1732.690 kb on - strand, within PS417_07905 at 1732.747 kb on + strand, within PS417_07905 at 1732.747 kb on + strand, within PS417_07905 at 1732.747 kb on + strand, within PS417_07905 at 1732.748 kb on - strand, within PS417_07905 at 1732.748 kb on - strand, within PS417_07905 at 1732.748 kb on - strand, within PS417_07905 at 1732.808 kb on + strand at 1732.809 kb on - strand at 1732.915 kb on - strand at 1733.165 kb on + strand at 1733.165 kb on + strand at 1733.166 kb on - strand at 1733.333 kb on - strand, within PS417_07910 at 1733.402 kb on + strand, within PS417_07910 at 1733.402 kb on + strand, within PS417_07910 at 1733.403 kb on - strand, within PS417_07910 at 1733.403 kb on - strand, within PS417_07910 at 1733.403 kb on - strand, within PS417_07910 at 1733.412 kb on + strand, within PS417_07910 at 1733.412 kb on + strand, within PS417_07910 at 1733.412 kb on + strand, within PS417_07910 at 1733.413 kb on - strand, within PS417_07910 at 1733.517 kb on + strand, within PS417_07910 at 1733.518 kb on - strand, within PS417_07910 at 1733.518 kb on - strand, within PS417_07910 at 1733.558 kb on + strand, within PS417_07910 at 1733.558 kb on + strand, within PS417_07910 at 1733.559 kb on - strand, within PS417_07910 at 1733.559 kb on - strand, within PS417_07910 at 1733.559 kb on - strand, within PS417_07910 at 1733.580 kb on + strand, within PS417_07910 at 1733.606 kb on + strand, within PS417_07910 at 1733.606 kb on + strand, within PS417_07910 at 1733.610 kb on + strand, within PS417_07910 at 1733.612 kb on + strand, within PS417_07910 at 1733.612 kb on + strand, within PS417_07910 at 1733.612 kb on + strand, within PS417_07910 at 1733.613 kb on - strand, within PS417_07910 at 1733.739 kb on + strand, within PS417_07910 at 1733.740 kb on - strand, within PS417_07910 at 1733.740 kb on - strand, within PS417_07910 at 1733.760 kb on + strand at 1733.761 kb on - strand, within PS417_07910 at 1733.777 kb on + strand, within PS417_07910 at 1733.779 kb on + strand, within PS417_07910 at 1733.779 kb on + strand, within PS417_07910 at 1733.779 kb on + strand at 1733.780 kb on - strand, within PS417_07910 at 1733.780 kb on - strand, within PS417_07910 at 1733.780 kb on - strand, within PS417_07910 at 1733.780 kb on - strand, within PS417_07910 at 1733.780 kb on - strand, within PS417_07910 at 1733.780 kb on - strand, within PS417_07910
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,731,421 + -0.6 1,731,422 - -1.3 1,731,431 + -0.3 1,731,432 - +0.1 1,731,484 + -4.5 1,731,485 - -0.0 1,731,509 - -1.3 1,731,587 + PS417_07900 0.13 +0.2 1,731,660 - PS417_07900 0.23 -3.1 1,731,660 - PS417_07900 0.23 +0.8 1,731,691 - PS417_07900 0.27 -2.6 1,731,694 + PS417_07900 0.27 -0.8 1,731,903 - PS417_07900 0.55 -1.6 1,731,903 - PS417_07900 0.55 +0.4 1,731,903 - PS417_07900 0.55 -0.5 1,731,903 - PS417_07900 0.55 -0.2 1,731,903 - PS417_07900 0.55 -1.8 1,731,904 + PS417_07900 0.55 +0.8 1,731,978 - PS417_07900 0.65 +0.6 1,731,995 - PS417_07900 0.68 -0.2 1,732,091 + PS417_07900 0.80 +0.5 1,732,091 + PS417_07900 0.80 +0.0 1,732,091 + PS417_07900 0.80 -1.4 1,732,092 - PS417_07900 0.81 -2.1 1,732,092 - PS417_07900 0.81 -0.6 1,732,135 - PS417_07900 0.86 -0.4 1,732,184 - -0.8 1,732,184 - -0.1 1,732,230 - +0.5 1,732,287 + -1.8 1,732,288 - -0.1 1,732,309 - +0.2 1,732,343 + +0.6 1,732,359 - -1.1 1,732,420 - PS417_07905 0.12 +0.1 1,732,508 + PS417_07905 0.30 -0.3 1,732,555 + PS417_07905 0.39 -3.2 1,732,618 + PS417_07905 0.52 -0.0 1,732,618 + PS417_07905 0.52 -2.2 1,732,618 + PS417_07905 0.52 +0.1 1,732,618 + PS417_07905 0.52 +0.4 1,732,618 + PS417_07905 0.52 +0.7 1,732,619 - PS417_07905 0.52 -0.7 1,732,619 - PS417_07905 0.52 -0.2 1,732,622 + PS417_07905 0.53 -2.3 1,732,622 + PS417_07905 0.53 -0.5 1,732,690 - PS417_07905 0.66 -1.1 1,732,690 - PS417_07905 0.66 -0.2 1,732,747 + PS417_07905 0.78 -0.6 1,732,747 + PS417_07905 0.78 -0.5 1,732,747 + PS417_07905 0.78 +0.6 1,732,748 - PS417_07905 0.78 -1.0 1,732,748 - PS417_07905 0.78 -0.6 1,732,748 - PS417_07905 0.78 +0.4 1,732,808 + -2.1 1,732,809 - -1.0 1,732,915 - +0.3 1,733,165 + -0.1 1,733,165 + +1.0 1,733,166 - -1.1 1,733,333 - PS417_07910 0.14 -0.9 1,733,402 + PS417_07910 0.20 -0.8 1,733,402 + PS417_07910 0.20 -0.5 1,733,403 - PS417_07910 0.20 +0.6 1,733,403 - PS417_07910 0.20 +0.5 1,733,403 - PS417_07910 0.20 -1.9 1,733,412 + PS417_07910 0.21 +1.2 1,733,412 + PS417_07910 0.21 +1.2 1,733,412 + PS417_07910 0.21 -1.0 1,733,413 - PS417_07910 0.21 -0.5 1,733,517 + PS417_07910 0.30 -1.3 1,733,518 - PS417_07910 0.30 +1.9 1,733,518 - PS417_07910 0.30 +0.1 1,733,558 + PS417_07910 0.34 -0.1 1,733,558 + PS417_07910 0.34 -0.2 1,733,559 - PS417_07910 0.34 -0.0 1,733,559 - PS417_07910 0.34 +0.9 1,733,559 - PS417_07910 0.34 +2.4 1,733,580 + PS417_07910 0.36 -0.2 1,733,606 + PS417_07910 0.38 -0.6 1,733,606 + PS417_07910 0.38 -0.3 1,733,610 + PS417_07910 0.38 +0.2 1,733,612 + PS417_07910 0.38 -0.0 1,733,612 + PS417_07910 0.38 -1.6 1,733,612 + PS417_07910 0.38 -2.5 1,733,613 - PS417_07910 0.38 +0.1 1,733,739 + PS417_07910 0.49 +1.1 1,733,740 - PS417_07910 0.50 +1.3 1,733,740 - PS417_07910 0.50 +0.4 1,733,760 + -1.3 1,733,761 - PS417_07910 0.51 +0.2 1,733,777 + PS417_07910 0.53 +0.2 1,733,779 + PS417_07910 0.53 -1.9 1,733,779 + PS417_07910 0.53 +0.1 1,733,779 + -0.2 1,733,780 - PS417_07910 0.53 -1.3 1,733,780 - PS417_07910 0.53 +0.5 1,733,780 - PS417_07910 0.53 -2.0 1,733,780 - PS417_07910 0.53 +0.5 1,733,780 - PS417_07910 0.53 +0.5 1,733,780 - PS417_07910 0.53 -0.1
Or see this region's nucleotide sequence