Strain Fitness in Pseudomonas simiae WCS417 around PS417_06505

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06500 and PS417_06505 are separated by 119 nucleotidesPS417_06505 and PS417_06510 are separated by 99 nucleotides PS417_06500: PS417_06500 - hypothetical protein, at 1,439,862 to 1,440,620 _06500 PS417_06505: PS417_06505 - membrane protein, at 1,440,740 to 1,441,204 _06505 PS417_06510: PS417_06510 - ATP-dependent DNA helicase DinG, at 1,441,304 to 1,443,448 _06510 Position (kb) 1440 1441 1442Strain fitness (log2 ratio) -2 -1 0 1 2at 1439.755 kb on + strandat 1439.867 kb on + strandat 1439.868 kb on - strandat 1439.868 kb on - strandat 1439.875 kb on + strandat 1439.875 kb on + strandat 1439.875 kb on + strandat 1439.875 kb on + strandat 1439.876 kb on - strandat 1439.876 kb on - strandat 1439.876 kb on - strandat 1439.876 kb on - strandat 1440.279 kb on + strand, within PS417_06500at 1440.526 kb on - strand, within PS417_06500at 1440.741 kb on + strandat 1440.741 kb on + strandat 1440.741 kb on + strandat 1440.741 kb on + strandat 1440.743 kb on + strandat 1440.927 kb on + strand, within PS417_06505at 1440.927 kb on + strand, within PS417_06505at 1440.928 kb on - strand, within PS417_06505at 1440.951 kb on + strand, within PS417_06505at 1441.170 kb on - strandat 1441.170 kb on - strandat 1441.170 kb on - strandat 1441.170 kb on - strandat 1441.182 kb on + strandat 1441.182 kb on + strandat 1441.182 kb on + strandat 1441.182 kb on + strandat 1441.300 kb on - strandat 1441.518 kb on - strandat 1441.682 kb on + strand, within PS417_06510at 1441.682 kb on + strand, within PS417_06510at 1441.683 kb on - strand, within PS417_06510at 1441.683 kb on - strand, within PS417_06510at 1441.708 kb on - strand, within PS417_06510at 1441.959 kb on - strand, within PS417_06510at 1441.959 kb on - strand, within PS417_06510at 1442.050 kb on - strand, within PS417_06510at 1442.075 kb on + strand, within PS417_06510at 1442.075 kb on + strand, within PS417_06510at 1442.075 kb on + strand, within PS417_06510at 1442.076 kb on - strand, within PS417_06510at 1442.076 kb on - strand, within PS417_06510

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,439,755 + -0.6
1,439,867 + -0.2
1,439,868 - -1.3
1,439,868 - -0.0
1,439,875 + +0.4
1,439,875 + +0.0
1,439,875 + +1.2
1,439,875 + -0.5
1,439,876 - -0.8
1,439,876 - -0.6
1,439,876 - +0.6
1,439,876 - -1.9
1,440,279 + PS417_06500 0.55 -1.9
1,440,526 - PS417_06500 0.87 -1.8
1,440,741 + +0.2
1,440,741 + -0.6
1,440,741 + -1.1
1,440,741 + -0.9
1,440,743 + -0.0
1,440,927 + PS417_06505 0.40 -0.7
1,440,927 + PS417_06505 0.40 -0.4
1,440,928 - PS417_06505 0.40 -1.1
1,440,951 + PS417_06505 0.45 +1.8
1,441,170 - -0.4
1,441,170 - -2.6
1,441,170 - +0.0
1,441,170 - +0.6
1,441,182 + +0.8
1,441,182 + -1.3
1,441,182 + +0.0
1,441,182 + +1.0
1,441,300 - +0.2
1,441,518 - -1.1
1,441,682 + PS417_06510 0.18 +0.8
1,441,682 + PS417_06510 0.18 -1.7
1,441,683 - PS417_06510 0.18 +0.1
1,441,683 - PS417_06510 0.18 -1.4
1,441,708 - PS417_06510 0.19 -0.1
1,441,959 - PS417_06510 0.31 +0.7
1,441,959 - PS417_06510 0.31 +0.5
1,442,050 - PS417_06510 0.35 -2.0
1,442,075 + PS417_06510 0.36 +0.8
1,442,075 + PS417_06510 0.36 -1.8
1,442,075 + PS417_06510 0.36 +0.2
1,442,076 - PS417_06510 0.36 -0.8
1,442,076 - PS417_06510 0.36 -0.8

Or see this region's nucleotide sequence