Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05205 and PS417_05210 are separated by 277 nucleotides PS417_05210 and PS417_05215 overlap by 1 nucleotides PS417_05215 and PS417_05220 are separated by 79 nucleotides
PS417_05205: PS417_05205 - pyridoxine 5'-phosphate synthase, at 1,155,078 to 1,155,821
_05205
PS417_05210: PS417_05210 - copper oxidase, at 1,156,099 to 1,157,475
_05210
PS417_05215: PS417_05215 - zinc-binding protein, at 1,157,475 to 1,157,972
_05215
PS417_05220: PS417_05220 - tRNA methyltransferase, at 1,158,052 to 1,159,008
_05220
Position (kb)
1156
1157
1158 Strain fitness (log2 ratio)
-2
-1
0
1 at 1155.820 kb on - strand at 1155.820 kb on - strand at 1155.835 kb on - strand at 1155.835 kb on - strand at 1155.904 kb on - strand at 1155.904 kb on - strand at 1155.904 kb on - strand at 1155.904 kb on - strand at 1155.904 kb on - strand at 1155.980 kb on + strand at 1155.981 kb on - strand at 1155.981 kb on - strand at 1155.985 kb on - strand at 1155.985 kb on - strand at 1156.050 kb on + strand at 1156.050 kb on + strand at 1156.085 kb on + strand at 1156.435 kb on + strand, within PS417_05210 at 1156.435 kb on + strand, within PS417_05210 at 1156.435 kb on + strand, within PS417_05210 at 1156.436 kb on - strand, within PS417_05210 at 1156.468 kb on + strand, within PS417_05210 at 1156.507 kb on + strand, within PS417_05210 at 1156.508 kb on - strand, within PS417_05210 at 1156.513 kb on + strand, within PS417_05210 at 1156.514 kb on - strand, within PS417_05210 at 1156.604 kb on - strand, within PS417_05210 at 1156.804 kb on + strand, within PS417_05210 at 1156.805 kb on - strand, within PS417_05210 at 1156.840 kb on + strand, within PS417_05210 at 1156.888 kb on + strand, within PS417_05210 at 1157.230 kb on + strand, within PS417_05210 at 1157.231 kb on - strand, within PS417_05210 at 1157.233 kb on - strand, within PS417_05210 at 1157.347 kb on + strand at 1157.347 kb on + strand at 1157.347 kb on + strand at 1157.348 kb on - strand at 1158.149 kb on + strand, within PS417_05220 at 1158.149 kb on + strand, within PS417_05220 at 1158.212 kb on - strand, within PS417_05220 at 1158.275 kb on - strand, within PS417_05220 at 1158.275 kb on - strand, within PS417_05220 at 1158.280 kb on - strand, within PS417_05220 at 1158.280 kb on - strand, within PS417_05220 at 1158.423 kb on - strand, within PS417_05220
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,155,820 - -0.5 1,155,820 - -0.4 1,155,835 - -1.6 1,155,835 - -0.8 1,155,904 - -0.2 1,155,904 - +0.6 1,155,904 - -1.0 1,155,904 - +1.0 1,155,904 - -1.4 1,155,980 + -0.5 1,155,981 - -0.4 1,155,981 - -2.6 1,155,985 - +0.2 1,155,985 - +0.2 1,156,050 + -0.8 1,156,050 + -0.5 1,156,085 + +0.4 1,156,435 + PS417_05210 0.24 -0.1 1,156,435 + PS417_05210 0.24 +0.2 1,156,435 + PS417_05210 0.24 +0.1 1,156,436 - PS417_05210 0.24 -1.6 1,156,468 + PS417_05210 0.27 +1.1 1,156,507 + PS417_05210 0.30 -1.8 1,156,508 - PS417_05210 0.30 +0.1 1,156,513 + PS417_05210 0.30 -1.8 1,156,514 - PS417_05210 0.30 -2.3 1,156,604 - PS417_05210 0.37 -2.2 1,156,804 + PS417_05210 0.51 +0.2 1,156,805 - PS417_05210 0.51 -1.4 1,156,840 + PS417_05210 0.54 -2.1 1,156,888 + PS417_05210 0.57 +0.6 1,157,230 + PS417_05210 0.82 -0.7 1,157,231 - PS417_05210 0.82 -0.6 1,157,233 - PS417_05210 0.82 -1.6 1,157,347 + -0.2 1,157,347 + -1.6 1,157,347 + +0.7 1,157,348 - +0.6 1,158,149 + PS417_05220 0.10 -1.6 1,158,149 + PS417_05220 0.10 +0.1 1,158,212 - PS417_05220 0.17 -0.3 1,158,275 - PS417_05220 0.23 -0.3 1,158,275 - PS417_05220 0.23 -2.0 1,158,280 - PS417_05220 0.24 -0.6 1,158,280 - PS417_05220 0.24 +0.9 1,158,423 - PS417_05220 0.39 -0.6
Or see this region's nucleotide sequence