Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04575 and PS417_04580 are separated by 92 nucleotides PS417_04580 and PS417_04585 overlap by 1 nucleotides PS417_04585 and PS417_04590 are separated by 209 nucleotides
PS417_04575: PS417_04575 - DnaA initiator-associating protein DiaA, at 1,013,049 to 1,013,642
_04575
PS417_04580: PS417_04580 - hypothetical protein, at 1,013,735 to 1,014,106
_04580
PS417_04585: PS417_04585 - hypothetical protein, at 1,014,106 to 1,015,917
_04585
PS417_04590: PS417_04590 - methyltransferase, at 1,016,127 to 1,016,999
_04590
Position (kb) 1014
1015
1016 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1013.655 kb on - strand at 1013.655 kb on - strand at 1013.655 kb on - strand at 1013.955 kb on - strand, within PS417_04580 at 1013.955 kb on - strand, within PS417_04580 at 1013.955 kb on - strand, within PS417_04580 at 1013.957 kb on + strand, within PS417_04580 at 1013.963 kb on - strand, within PS417_04580 at 1014.001 kb on + strand, within PS417_04580 at 1014.002 kb on - strand, within PS417_04580 at 1014.005 kb on + strand, within PS417_04580 at 1014.890 kb on + strand, within PS417_04585 at 1014.891 kb on - strand, within PS417_04585 at 1015.491 kb on - strand, within PS417_04585 at 1015.919 kb on + strand at 1015.919 kb on + strand at 1015.919 kb on + strand at 1015.920 kb on - strand at 1015.920 kb on - strand at 1015.985 kb on + strand at 1015.986 kb on - strand at 1016.007 kb on + strand at 1016.008 kb on - strand at 1016.090 kb on + strand at 1016.090 kb on + strand at 1016.091 kb on - strand at 1016.091 kb on - strand at 1016.357 kb on + strand, within PS417_04590 at 1016.466 kb on - strand, within PS417_04590 at 1016.473 kb on + strand, within PS417_04590 at 1016.473 kb on + strand, within PS417_04590 at 1016.473 kb on + strand, within PS417_04590 at 1016.474 kb on - strand, within PS417_04590 at 1016.474 kb on - strand, within PS417_04590 at 1016.474 kb on - strand, within PS417_04590 at 1016.575 kb on + strand, within PS417_04590 at 1016.789 kb on + strand, within PS417_04590 at 1016.876 kb on + strand, within PS417_04590 at 1016.877 kb on - strand, within PS417_04590 at 1016.887 kb on + strand, within PS417_04590 at 1016.887 kb on + strand, within PS417_04590 at 1016.888 kb on - strand, within PS417_04590
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,013,655 - -1.5 1,013,655 - -0.2 1,013,655 - +0.9 1,013,955 - PS417_04580 0.59 +0.2 1,013,955 - PS417_04580 0.59 +0.3 1,013,955 - PS417_04580 0.59 +0.2 1,013,957 + PS417_04580 0.60 +0.5 1,013,963 - PS417_04580 0.61 -0.5 1,014,001 + PS417_04580 0.72 +0.0 1,014,002 - PS417_04580 0.72 +1.1 1,014,005 + PS417_04580 0.73 -0.3 1,014,890 + PS417_04585 0.43 -1.4 1,014,891 - PS417_04585 0.43 -2.9 1,015,491 - PS417_04585 0.76 +0.9 1,015,919 + -0.1 1,015,919 + +0.4 1,015,919 + +2.5 1,015,920 - -1.8 1,015,920 - -0.1 1,015,985 + +0.1 1,015,986 - +1.5 1,016,007 + -1.8 1,016,008 - +0.0 1,016,090 + +0.2 1,016,090 + +0.2 1,016,091 - +0.9 1,016,091 - +0.8 1,016,357 + PS417_04590 0.26 -1.0 1,016,466 - PS417_04590 0.39 +3.2 1,016,473 + PS417_04590 0.40 -2.2 1,016,473 + PS417_04590 0.40 -1.7 1,016,473 + PS417_04590 0.40 -1.6 1,016,474 - PS417_04590 0.40 -0.3 1,016,474 - PS417_04590 0.40 -2.3 1,016,474 - PS417_04590 0.40 -0.6 1,016,575 + PS417_04590 0.51 -1.6 1,016,789 + PS417_04590 0.76 -2.1 1,016,876 + PS417_04590 0.86 -0.5 1,016,877 - PS417_04590 0.86 -1.3 1,016,887 + PS417_04590 0.87 -1.2 1,016,887 + PS417_04590 0.87 -0.6 1,016,888 - PS417_04590 0.87 -2.1
Or see this region's nucleotide sequence