Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27815 and PS417_27820 are separated by 10 nucleotides PS417_27820 and PS417_27825 are separated by 167 nucleotides PS417_27825 and PS417_27830 are separated by 60 nucleotides
PS417_27815: PS417_27815 - hypothetical protein, at 5,997,097 to 5,997,960
_27815
PS417_27820: PS417_27820 - guanylate kinase, at 5,997,971 to 5,998,591
_27820
PS417_27825: PS417_27825 - DNA-directed RNA polymerase subunit omega, at 5,998,759 to 5,999,022
_27825
PS417_27830: PS417_27830 - (p)ppGpp synthetase, at 5,999,083 to 6,001,188
_27830
Position (kb)
5997
5998
5999 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 5996.984 kb on - strand at 5997.036 kb on - strand at 5997.053 kb on + strand at 5997.264 kb on + strand, within PS417_27815 at 5997.264 kb on + strand at 5997.858 kb on + strand, within PS417_27815 at 5997.858 kb on + strand, within PS417_27815 at 5998.623 kb on + strand at 5998.623 kb on + strand at 5998.623 kb on + strand at 5998.624 kb on - strand at 5999.026 kb on + strand at 5999.026 kb on + strand at 5999.026 kb on + strand at 5999.026 kb on + strand at 5999.026 kb on + strand at 5999.041 kb on + strand at 5999.093 kb on + strand at 5999.093 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,996,984 - +1.5 5,997,036 - -0.4 5,997,053 + -0.4 5,997,264 + PS417_27815 0.19 +0.3 5,997,264 + +0.2 5,997,858 + PS417_27815 0.88 -0.7 5,997,858 + PS417_27815 0.88 +0.3 5,998,623 + -2.3 5,998,623 + +0.1 5,998,623 + +1.2 5,998,624 - +0.2 5,999,026 + -0.7 5,999,026 + -1.7 5,999,026 + -3.2 5,999,026 + -2.1 5,999,026 + -1.1 5,999,041 + -1.6 5,999,093 + -1.1 5,999,093 + -3.9
Or see this region's nucleotide sequence