Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02515 and PS417_02520 are separated by 139 nucleotides PS417_02520 and PS417_02525 are separated by 93 nucleotides
PS417_02515: PS417_02515 - adenylosuccinate synthetase, at 574,731 to 576,020
_02515
PS417_02520: PS417_02520 - chemotaxis protein, at 576,160 to 578,094
_02520
PS417_02525: PS417_02525 - iron ABC transporter permease, at 578,188 to 579,753
_02525
Position (kb) 576
577
578
579 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 576.022 kb on - strand at 576.022 kb on - strand at 576.034 kb on + strand at 576.182 kb on + strand at 576.183 kb on - strand at 576.218 kb on + strand at 576.218 kb on + strand at 576.218 kb on + strand at 576.219 kb on - strand at 576.219 kb on - strand at 576.219 kb on - strand at 576.222 kb on + strand at 576.605 kb on + strand, within PS417_02520 at 576.605 kb on + strand, within PS417_02520 at 576.606 kb on - strand, within PS417_02520 at 576.610 kb on + strand, within PS417_02520 at 576.611 kb on - strand, within PS417_02520 at 577.239 kb on + strand, within PS417_02520 at 577.240 kb on - strand, within PS417_02520 at 577.529 kb on + strand, within PS417_02520 at 577.530 kb on - strand, within PS417_02520 at 577.758 kb on + strand, within PS417_02520 at 577.758 kb on + strand, within PS417_02520 at 577.842 kb on - strand, within PS417_02520 at 578.092 kb on + strand at 578.093 kb on - strand at 578.222 kb on + strand at 578.261 kb on + strand at 578.262 kb on - strand at 578.383 kb on + strand, within PS417_02525 at 578.384 kb on - strand, within PS417_02525 at 578.384 kb on - strand, within PS417_02525 at 578.555 kb on + strand at 578.556 kb on - strand, within PS417_02525 at 578.586 kb on - strand, within PS417_02525 at 578.586 kb on - strand, within PS417_02525 at 578.601 kb on - strand, within PS417_02525 at 578.601 kb on - strand, within PS417_02525 at 578.601 kb on - strand, within PS417_02525 at 578.615 kb on + strand, within PS417_02525 at 578.831 kb on - strand, within PS417_02525 at 578.831 kb on - strand, within PS417_02525 at 578.831 kb on - strand, within PS417_02525 at 578.897 kb on + strand, within PS417_02525 at 578.897 kb on + strand, within PS417_02525 at 578.897 kb on + strand, within PS417_02525 at 579.010 kb on + strand, within PS417_02525 at 579.010 kb on + strand, within PS417_02525 at 579.093 kb on - strand, within PS417_02525 at 579.093 kb on - strand, within PS417_02525
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 576,022 - -0.1 576,022 - -1.3 576,034 + +0.3 576,182 + -1.1 576,183 - +1.0 576,218 + -1.3 576,218 + +1.8 576,218 + -1.1 576,219 - +1.3 576,219 - +0.2 576,219 - -0.8 576,222 + -0.4 576,605 + PS417_02520 0.23 -0.1 576,605 + PS417_02520 0.23 -1.3 576,606 - PS417_02520 0.23 -2.6 576,610 + PS417_02520 0.23 -1.4 576,611 - PS417_02520 0.23 -1.0 577,239 + PS417_02520 0.56 -0.7 577,240 - PS417_02520 0.56 +0.2 577,529 + PS417_02520 0.71 +0.6 577,530 - PS417_02520 0.71 -1.4 577,758 + PS417_02520 0.83 -0.8 577,758 + PS417_02520 0.83 -1.0 577,842 - PS417_02520 0.87 -2.3 578,092 + -0.6 578,093 - -0.5 578,222 + +0.4 578,261 + +0.6 578,262 - +0.3 578,383 + PS417_02525 0.12 -0.0 578,384 - PS417_02525 0.13 +0.6 578,384 - PS417_02525 0.13 -1.6 578,555 + +3.0 578,556 - PS417_02525 0.23 -2.5 578,586 - PS417_02525 0.25 -0.8 578,586 - PS417_02525 0.25 +0.3 578,601 - PS417_02525 0.26 +0.1 578,601 - PS417_02525 0.26 -0.3 578,601 - PS417_02525 0.26 +0.3 578,615 + PS417_02525 0.27 +0.3 578,831 - PS417_02525 0.41 +0.4 578,831 - PS417_02525 0.41 +0.1 578,831 - PS417_02525 0.41 +0.4 578,897 + PS417_02525 0.45 +0.5 578,897 + PS417_02525 0.45 +1.3 578,897 + PS417_02525 0.45 +1.4 579,010 + PS417_02525 0.52 -1.4 579,010 + PS417_02525 0.52 +1.4 579,093 - PS417_02525 0.58 -0.2 579,093 - PS417_02525 0.58 -0.4
Or see this region's nucleotide sequence